{"id":"W4385270786","doi":"10.1093/molbev/msad172","title":"Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes","year":2023,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria; Université de Montréal","funders":"Alliance de recherche numérique du Canada; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)","keywords":"Biology; DNA methylation; Epigenome; Epigenetics; CpG site; Epigenomics; Methylation; Genome; Genetics; Transposable element; Gene; Transcriptome; Methylated DNA immunoprecipitation; Evolutionary biology; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001854304,0.0002153872,0.0002382835,0.0008399488,0.0003529776,0.0005491792,0.0001458227,0.0003486084,0.0007356685],"category_scores_gemma":[0.0004035389,0.0001583473,0.000239888,0.0004819797,0.0002936949,0.0001910978,0.0007763014,0.0003703586,0.000179127],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001859176,"about_ca_system_score_gemma":0.0001748155,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001584178,"about_ca_topic_score_gemma":0.00350234,"domain_scores_codex":[0.9999046,0.000007851436,0.000007074305,0.00004095069,0.00001744135,0.00002216451],"domain_scores_gemma":[0.999616,0.00007787184,0.00009011711,0.00003691496,0.00007377224,0.0001053017],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005405825,0.00002283481,0.1515686,0.00006985474,0.00006829815,0.0001315955,0.0004016234,0.0002282111,0.8368002,0.0001958432,0.00004746791,0.009924787],"study_design_scores_gemma":[0.00001485675,0.0001456735,0.974982,0.00000880624,0.00005441973,0.000216573,0.0002969737,0.000873347,0.02178721,0.0002038984,0.001399229,0.00001692185],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980071,0.0001118593,0.0008949285,0.00001461832,0.000002279318,0.00000510407,0.0005950498,0.00001496868,0.0003540608],"genre_scores_gemma":[0.9963999,0.0001557033,0.001313348,0.00004867632,0.000003893384,0.00001816396,0.001479844,0.00001090151,0.0005695617],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001584178,"threshold_uncertainty_score":0.003149927,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01691577536503375,"score_gpt":0.2533889359357738,"score_spread":0.23647316057074,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}