{"id":"W4385270786","doi":"10.1093/molbev/msad172","title":"Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes","year":2023,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria; Université de Montréal","funders":"Alliance de recherche numérique du Canada; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)","keywords":"Biology; DNA methylation; Epigenome; Epigenetics; CpG site; Epigenomics; Methylation; Genome; Genetics; Transposable element; Gene; Transcriptome; Methylated DNA immunoprecipitation; Evolutionary biology; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004759541,0.0001020635,0.0001033099,0.00005581031,0.0001320039,0.000006083232,0.000130233,0.0001833221,0.000001315071],"category_scores_gemma":[0.000112701,0.00006887299,0.00005966874,0.0002322982,0.0001525755,0.000003269858,0.0001165011,0.00008980886,0.00000244293],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002512346,"about_ca_system_score_gemma":0.00004737912,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000180497,"about_ca_topic_score_gemma":0.0005467968,"domain_scores_codex":[0.9990943,0.0002197206,0.0001983656,0.0002348783,0.00006657412,0.000186147],"domain_scores_gemma":[0.9995559,0.00001978939,0.00009761465,0.000250884,0.00005431126,0.00002149631],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001497885,0.000005559237,0.09449227,0.000002988634,0.00001675469,2.920953e-7,0.00007528481,0.0008103992,0.8999212,0.003944386,0.000005955762,0.0007099499],"study_design_scores_gemma":[0.0002778914,0.0002221082,0.3114442,0.00001420501,0.00002257759,0.000002245985,0.0002080135,0.009324053,0.6272474,0.05088335,0.0001922668,0.0001616677],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9826268,0.007651376,0.00893318,0.0002476288,0.0001102355,0.0002273325,0.00001103741,0.000007199973,0.0001852204],"genre_scores_gemma":[0.9993249,0.0002506535,0.0001540813,0.00006468123,0.00007858295,0.000026425,0.00006477811,0.000009139823,0.00002676862],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2726738,"threshold_uncertainty_score":0.2808559,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01691577536503375,"score_gpt":0.2533889359357738,"score_spread":0.23647316057074,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}