{"id":"W4385323638","doi":"10.1021/acs.jmedchem.3c00314","title":"Discovery and Characterization of a Chemical Probe Targeting the Zinc-Finger Ubiquitin-Binding Domain of HDAC6","year":2023,"lang":"en","type":"article","venue":"Journal of Medicinal Chemistry","topic":"Histone Deacetylase Inhibitors Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre; Structural Genomics Consortium; University of Toronto","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Genentech; Ontario Genomics Institute; Takeda Pharmaceutical Company; European Federation of Pharmaceutical Industries and Associations; Structural Genomics Consortium; Janssen Pharmaceuticals; Merck KGaA; National Institutes of Health; Ontario Genomics; Office of Research Infrastructure Programs, National Institutes of Health; Genome Canada; Bayer; Pfizer; Bristol-Myers Squibb; McGill University; Office of Science; Austrian Science Fund; Boehringer Ingelheim; Argonne National Laboratory; U.S. Department of Energy","keywords":"HDAC6; Chemistry; Ubiquitin; Small molecule; Zinc finger; Cell biology; Drug discovery; Ubiquitin ligase; In vitro; Histone deacetylase; Biochemistry; Computational biology; Histone; Biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002388831,0.0003450031,0.0002230018,0.0001647832,0.0001360655,0.0001863188,0.0003542573,0.0004877158,0.001147611],"category_scores_gemma":[0.0001909604,0.0001159064,0.0002894883,0.0001352141,0.0002082275,0.0001462173,0.0001343946,0.0003853025,0.0004681152],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004373165,"about_ca_system_score_gemma":0.000232174,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008743885,"about_ca_topic_score_gemma":0.001043335,"domain_scores_codex":[0.9998959,0.00001616626,0.00000476303,0.00002263175,0.00003654731,0.0000239419],"domain_scores_gemma":[0.9999295,0.00001406333,0.00001644997,0.000006810759,0.0000114738,0.00002167272],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002568037,0.00001572051,0.0000414364,0.00001628028,0.000002793138,0.00002082637,0.000005768226,0.0001550156,0.9986359,0.00007990556,0.00003643799,0.0009641935],"study_design_scores_gemma":[0.0000111111,0.0002162364,0.0003722679,0.000001543052,0.000005162379,0.0000748193,0.000005852537,0.000579857,0.996995,0.00001507674,0.00172024,0.000003043823],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9568248,0.002196429,0.03509779,0.0002925594,0.00003354334,0.000275914,0.001182564,0.0001575189,0.003938756],"genre_scores_gemma":[0.9664505,0.001302864,0.02583011,0.0001715297,0.0000168615,0.0001261259,0.00162393,0.00003244247,0.004445699],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001147611,"threshold_uncertainty_score":0.003839076,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009124392131888431,"score_gpt":0.2647263205776583,"score_spread":0.2556019284457698,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}