{"id":"W4385336183","doi":"10.1016/j.virol.2023.109852","title":"Replication of infectious bronchitis virus (IBV) Delmarva (DMV)/1639 variant in primary and secondary lymphoid organs leads to immunosuppression in chickens","year":2023,"lang":"en","type":"article","venue":"Virology","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary","funders":"Egg Farmers of Canada; Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Poultry Research Council","keywords":"Infectious bronchitis virus; Biology; Bursa of Fabricius; Virology; Immunosuppression; Spleen; Virus; Specific-pathogen-free; Viral replication; Harderian gland; Immune system; Avian infectious bronchitis virus; Coronavirus; Immunology; Pathology; Infectious disease (medical specialty); Coronavirus disease 2019 (COVID-19); Medicine; Endocrinology; Disease","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003272024,0.0001229056,0.0002687175,0.0001030787,0.0001129855,0.000008981358,0.0001220901,0.0001470431,0.0001214125],"category_scores_gemma":[0.0001623629,0.00006354359,0.0000322388,0.0008094296,0.0001101695,0.00007920778,0.0002625634,0.000151103,0.00005447219],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006988577,"about_ca_system_score_gemma":0.00001534772,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003166836,"about_ca_topic_score_gemma":0.01189319,"domain_scores_codex":[0.9988098,0.0001313513,0.0003131172,0.0004065429,0.00007656361,0.000262608],"domain_scores_gemma":[0.9995129,0.0002275071,0.00007943774,0.0001133827,0.00002776187,0.00003908247],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007088421,0.00008354832,0.168436,0.000009473579,0.000007095497,0.00001800032,0.0003120187,0.00002137288,0.8068352,0.0001671666,0.0002596181,0.02377959],"study_design_scores_gemma":[0.0002703469,0.0005047855,0.9925424,0.00001629873,0.000004927253,0.00008635029,0.00007499615,0.00003516163,0.003802496,0.0004136818,0.002134418,0.0001141699],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970379,0.0001678719,0.000005191873,0.000729693,0.00009672903,0.0002407516,0.00004507802,0.00007096193,0.001605852],"genre_scores_gemma":[0.9989176,0.0004490757,0.00002670605,0.0003875276,0.00004358391,0.00005622991,0.00004023689,0.000002015706,0.00007701888],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8241063,"threshold_uncertainty_score":0.6636682,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01146627326536727,"score_gpt":0.2270564619298657,"score_spread":0.2155901886644984,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}