{"id":"W4385340373","doi":"10.1038/s41522-023-00412-5","title":"Distinct types of multicellular aggregates in Pseudomonas aeruginosa liquid cultures","year":2023,"lang":"en","type":"article","venue":"npj Biofilms and Microbiomes","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"Biotechnology and Biological Sciences Research Council; Engineering and Physical Sciences Research Council; Canadian Institutes of Health Research; National Institute of Allergy and Infectious Diseases; Cystic Fibrosis Canada; Norwegian Biodiversity Information Centre; UK Research and Innovation; Deutsche Forschungsgemeinschaft; National Institutes of Health","keywords":"Multicellular organism; Pseudomonas aeruginosa; Biofilm; Extracellular; Biology; Bacteria; Microbiology; Cell biology; Chemistry; Cell; Biochemistry; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001384447,0.0001815621,0.0002232303,0.0001155665,0.00005702972,0.00002527841,0.0001036206,0.0001868357,0.00001572475],"category_scores_gemma":[0.00003894396,0.0001507,0.00007447034,0.0002371883,0.0001666785,0.000005708835,0.0001407548,0.00006175043,0.00001295366],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004832026,"about_ca_system_score_gemma":0.00002518166,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001555362,"about_ca_topic_score_gemma":0.00009303455,"domain_scores_codex":[0.9990493,0.00003461565,0.0002447987,0.0003313581,0.00005317717,0.0002867349],"domain_scores_gemma":[0.9996026,0.00001448183,0.00008892205,0.0001938464,0.00004358022,0.00005657842],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001183055,0.00003491093,0.001765488,0.00005099191,0.0000312745,0.0000096471,0.0000980585,0.000001717338,0.9952105,0.00004302058,0.0005981412,0.00203799],"study_design_scores_gemma":[0.0005119455,0.0001925716,0.005131442,0.0000581727,0.00001466681,0.00001792113,0.0001339572,0.00001239887,0.9622224,0.000005255975,0.03149049,0.0002088048],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961873,0.00301553,0.000001617138,0.0001795363,0.0001774205,0.0001332644,0.00008396999,0.00002305511,0.0001983196],"genre_scores_gemma":[0.997283,0.001161049,0.0004641503,0.00005482996,0.00009343154,0.000003836949,0.0003300972,0.00001945937,0.0005901057],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03298808,"threshold_uncertainty_score":0.6145366,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007493675033467448,"score_gpt":0.2373107993071902,"score_spread":0.2298171242737227,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}