{"id":"W4385406369","doi":"10.1007/s10482-023-01857-6","title":"Phylogenomic and molecular markers based studies on Staphylococcaceae and Gemella species. Proposals for an emended family Staphylococcaceae and three new families (Abyssicoccaceae fam. nov., Salinicoccaceae fam. nov. and Gemellaceae fam. nov.) harboring four new genera, Lacicoccus gen. nov., Macrococcoides gen. nov., Gemelliphila gen. nov., and Phocicoccus gen. nov.","year":2023,"lang":"en","type":"article","venue":"Antonie van Leeuwenhoek","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Clade; Genus; Type genus; Evolutionary biology; Taxon; Zoology; Phylogenetics; Botany; Type species; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006155308,0.000401367,0.0002485972,0.002330402,0.0004323369,0.0004500819,0.0002034295,0.0002821645,0.0006995272],"category_scores_gemma":[0.0009556372,0.0001162561,0.0004224702,0.002675618,0.0003092262,0.0003649566,0.0005889391,0.0005854462,0.0002635382],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003877947,"about_ca_system_score_gemma":0.0002612257,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002843763,"about_ca_topic_score_gemma":0.002099668,"domain_scores_codex":[0.999615,0.00009292977,0.00002809906,0.0001118544,0.00007149431,0.00008058263],"domain_scores_gemma":[0.9993099,0.0001626904,0.0001881917,0.00004187003,0.000135731,0.0001615901],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001341859,0.0001694704,0.1482386,0.0003306598,0.0001927222,0.0004996489,0.001214242,0.00129109,0.7832016,0.00157185,0.0003071036,0.06164128],"study_design_scores_gemma":[0.00002465468,0.0003871019,0.9606057,0.00008122985,0.0001555738,0.001084452,0.001134285,0.00382843,0.0212236,0.0007509449,0.01069329,0.00003075191],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9881485,0.003122213,0.003944516,0.0001950704,0.00002321197,0.00003756172,0.001451838,0.00002265805,0.003054512],"genre_scores_gemma":[0.9866899,0.001996032,0.006609054,0.0001763152,0.00002892578,0.0000385782,0.003623786,0.00001155549,0.0008258435],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002843763,"threshold_uncertainty_score":0.005654395,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05152527665773194,"score_gpt":0.288874796977301,"score_spread":0.2373495203195691,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}