{"id":"W4385519698","doi":"10.1093/cid/ciad455","title":"Timely Diagnosis of Incubating Syphilis Infections Using <i>Treponema pallidum</i> Transcription-Mediated Amplification Assay","year":2023,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"University of Washington","keywords":"Syphilis; Treponema; Medicine; Neisseria gonorrhoeae; Chlamydia trachomatis; Chlamydia; Men who have sex with men; Gynecology; Virology; Immunology; Internal medicine; Biology; Microbiology; Human immunodeficiency virus (HIV)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005569187,0.000260788,0.0007029896,0.0003306727,0.0002290637,0.00003993114,0.00008335174,0.0002120766,0.0003943876],"category_scores_gemma":[0.003696503,0.0002358643,0.0006183383,0.001033843,0.0002446966,0.0001241348,0.00003677185,0.0002211545,0.0002694884],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001302898,"about_ca_system_score_gemma":0.0002116133,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001450628,"about_ca_topic_score_gemma":0.00006497221,"domain_scores_codex":[0.9973291,0.0003073047,0.001148806,0.0005260185,0.000358153,0.0003306061],"domain_scores_gemma":[0.9950655,0.003307344,0.0003845447,0.0005223143,0.0003380752,0.0003822093],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002691627,0.003563149,0.9858646,0.0001338858,0.0003917219,0.0000279446,0.00005635204,0.0002915447,0.0007606262,0.0000776014,0.001689699,0.007115986],"study_design_scores_gemma":[0.002183446,0.0008964703,0.9900735,0.0003493825,0.001268201,0.000009825273,0.00007054734,0.002373665,0.000642067,0.0003732559,0.001524932,0.0002347261],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958302,0.0003574798,0.0003431089,0.0004343255,0.0005115545,0.0007797331,0.0002912353,0.0006463768,0.0008060297],"genre_scores_gemma":[0.9972734,0.001064982,0.000037276,0.0003417598,0.0003299826,0.0003856442,0.0004634409,0.00005255937,0.00005095578],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00688126,"threshold_uncertainty_score":0.9618268,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09495188923806819,"score_gpt":0.3900931858490243,"score_spread":0.2951412966109561,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}