{"id":"W4385603093","doi":"10.1093/gbe/evad146","title":"Haplotype-Resolved, Chromosome-Level Assembly of White Clover (<i>Trifolium repens</i> L., Fabaceae)","year":2023,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Office of Integrative Activities; Division of Integrative Organismal Systems; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; National Science Foundation","keywords":"Biology; Fabaceae; Haplotype; Trifolium repens; Ploidy; Evolutionary biology; Genetics; Genome; Sequence assembly; Polyploid; Gene; Botany; Allele; Transcriptome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003824213,0.0007096248,0.0005374111,0.00106214,0.0005751026,0.0007478288,0.0004823582,0.0005159072,0.002310855],"category_scores_gemma":[0.000925019,0.0003806961,0.0007327184,0.001268666,0.0001561952,0.0004200211,0.0005366691,0.0007740474,0.00209966],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004402859,"about_ca_system_score_gemma":0.0009523423,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007025181,"about_ca_topic_score_gemma":0.01637995,"domain_scores_codex":[0.9997898,0.00002113008,0.00001511759,0.0001070378,0.00004537895,0.00002150052],"domain_scores_gemma":[0.9995714,0.00008218893,0.0000919844,0.00006420309,0.0001339549,0.00005628924],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003493165,0.00007781009,0.007801124,0.0007396779,0.0001553886,0.0007036777,0.0007159051,0.004917019,0.9330769,0.001481524,0.005616838,0.044365],"study_design_scores_gemma":[0.000209229,0.0005131426,0.2480428,0.0003510368,0.0007964931,0.001979075,0.0007300178,0.07860009,0.3925955,0.003431451,0.2725086,0.0002425773],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6037161,0.003016469,0.2777335,0.0004947009,0.0002490641,0.0002810936,0.09767961,0.007020962,0.009808492],"genre_scores_gemma":[0.3963123,0.001637315,0.2858385,0.0002170336,0.00005317991,0.0003005204,0.30492,0.003237464,0.007483659],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007025181,"threshold_uncertainty_score":0.01396859,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02347839235023173,"score_gpt":0.2181603669750059,"score_spread":0.1946819746247742,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}