{"id":"W4385636656","doi":"10.1186/s13071-023-05869-z","title":"Transcriptional variation in Babesia gibsoni (Wuhan isolate) between in vivo and in vitro cultures in blood stage","year":2023,"lang":"en","type":"article","venue":"Parasites & Vectors","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"Fundamental Research Funds for the Central Universities; National Natural Science Foundation of China","keywords":"Biology; Transcriptome; Babesia; Infectivity; Babesiosis; In vitro; Gene; In vivo; Parasite hosting; Parasitology; Babesia bigemina; Virology; Genetics; Gene expression; Virus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003338815,0.0002277343,0.0003792546,0.0007819679,0.000051679,0.00002418347,0.0001246346,0.0002891537,0.0002218753],"category_scores_gemma":[0.0001151154,0.0002363407,0.00005495366,0.0009108018,0.00007892845,0.0001869064,0.00003174029,0.0003832885,0.00008330223],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001165188,"about_ca_system_score_gemma":0.00005870873,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004281988,"about_ca_topic_score_gemma":0.009303809,"domain_scores_codex":[0.9982427,0.000353934,0.0004362997,0.0004307315,0.00005241169,0.0004839673],"domain_scores_gemma":[0.9994534,0.000288105,0.00007157645,0.000138534,0.00001756474,0.00003081068],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001006818,0.0001497264,0.5891648,0.00002191659,0.00003267251,0.00002385528,0.001231765,0.0001368684,0.4090036,0.00006190345,0.00001934206,0.00005284713],"study_design_scores_gemma":[0.002028906,0.00006889889,0.9697168,0.00005677541,0.00002256692,0.00000574132,0.0001307971,0.00002729123,0.02734919,0.0001823316,0.0001828454,0.00022783],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976783,0.00145592,0.000006676819,0.0000914149,0.0001529402,0.000347087,0.00009949925,0.00008776238,0.00008034139],"genre_scores_gemma":[0.9993516,0.000141268,0.00001305947,0.00003922301,0.00002850667,0.00007885211,0.0001533188,0.00002145093,0.0001726826],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3816544,"threshold_uncertainty_score":0.9637693,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01095175845681544,"score_gpt":0.2579863339481145,"score_spread":0.2470345754912991,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}