{"id":"W4385699872","doi":"10.1038/s41598-023-38897-x","title":"Foreign DNA detection in genome-edited potatoes by high-throughput sequencing","year":2023,"lang":"en","type":"article","venue":"Scientific Reports","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Ministry of Agriculture, Forestry and Fisheries","keywords":"Genome; Gene; DNA sequencing; Biology; Genetics; Computational biology; Sequence assembly; CRISPR; Genome editing","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004455957,0.0003307702,0.000465845,0.0002933614,0.0001807652,0.0003703543,0.0003437071,0.0005343337,0.0004965336],"category_scores_gemma":[0.0006329019,0.0002564574,0.0004652951,0.0003556379,0.0001919273,0.0004106622,0.00022417,0.0004393996,0.0002682086],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002263726,"about_ca_system_score_gemma":0.0001615202,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008158933,"about_ca_topic_score_gemma":0.0008038447,"domain_scores_codex":[0.9997799,0.00004086503,0.00001755219,0.00008348256,0.00006248376,0.00001576492],"domain_scores_gemma":[0.9995975,0.0001705547,0.00007482341,0.00004573479,0.00009203611,0.00001936378],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001152161,0.00002447417,0.001909853,0.0001660505,0.00005010589,0.0001741873,0.00007433926,0.008412912,0.9815424,0.0002727442,0.0001429981,0.007114643],"study_design_scores_gemma":[0.00001894518,0.0002209283,0.007718644,0.00002522763,0.0000781554,0.000306633,0.00008897523,0.1643539,0.8233198,0.0005112959,0.003311484,0.00004605166],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7389966,0.001041148,0.2562732,0.00008594676,0.00004405223,0.00006854476,0.0009188136,0.001322325,0.001249348],"genre_scores_gemma":[0.7910031,0.001037172,0.2047902,0.00007779513,0.000007520309,0.000144826,0.001357001,0.0001504887,0.001431878],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008158933,"threshold_uncertainty_score":0.002356529,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007883330489234447,"score_gpt":0.2573576501381936,"score_spread":0.2494743196489591,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}