{"id":"W4385705706","doi":"10.2196/32848","title":"Effectiveness of Self-Collected, Ambient Temperature–Preserved Nasal Swabs Compared to Samples Collected by Trained Staff for Genotyping of Respiratory Viruses by Shotgun RNA Sequencing: Comparative Study","year":2023,"lang":"en","type":"article","venue":"JMIR Formative Research","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Centers for Disease Control and Prevention; National Institutes of Health","keywords":"Genotyping; Medicine; Context (archaeology); Preparedness; Pandemic; Data collection; Environmental health; Coronavirus disease 2019 (COVID-19); Biology; Internal medicine; Infectious disease (medical specialty); Genotype","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.003553249,0.0003603332,0.001176136,0.001277261,0.00057975,0.00006814118,0.0003641675,0.0001676849,0.00001620156],"category_scores_gemma":[0.001576955,0.0003209488,0.0001755703,0.005399663,0.0002411809,0.0002325791,0.0002183571,0.0006406585,0.00001373205],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008081053,"about_ca_system_score_gemma":0.0007824428,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003608428,"about_ca_topic_score_gemma":0.0001554201,"domain_scores_codex":[0.9943808,0.00187392,0.0009980376,0.0005700999,0.001349849,0.0008273367],"domain_scores_gemma":[0.9920477,0.004259449,0.0002898142,0.0004566585,0.002741042,0.0002053487],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.005538716,0.001301639,0.001736204,0.001151146,0.0005606735,0.000007158334,0.02916205,0.00003887769,0.9472498,0.00001697567,0.01319024,0.00004651624],"study_design_scores_gemma":[0.007739847,0.008085757,0.02018967,0.0005834562,0.00004268082,0.000003154665,0.02295704,0.00218158,0.9371419,0.00003262408,0.0007708255,0.0002714717],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901919,0.0001025852,0.000175718,0.00002268882,0.0000940924,0.008219807,0.0005709197,0.0002753205,0.0003469034],"genre_scores_gemma":[0.9975308,0.000001889121,0.0002514664,0.00005976967,0.0000337674,0.001922428,0.00009064347,0.00005828496,0.00005098065],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01845346,"threshold_uncertainty_score":0.9999242,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.193103105685938,"score_gpt":0.439372802461695,"score_spread":0.246269696775757,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}