{"id":"W4385730834","doi":"10.17504/protocols.io.5qpvo3xxzv4o/v1","title":"Complete Hepatitis B Virus Sequencing using an ONT-Based Next-Generation Sequencing Protocol v1","year":2023,"lang":"en","type":"preprint","venue":"","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Response Biomedical (Canada)","funders":"","keywords":"Minion; Amplicon; Nanopore sequencing; Primer (cosmetics); DNA sequencing; Hepatitis B virus; Computational biology; Biology; Protocol (science); Computer science; Virology; Genetics; Polymerase chain reaction; Virus; DNA; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002008959,0.001561444,0.001232717,0.001485029,0.001417283,0.001387473,0.001392025,0.001159903,0.02816726],"category_scores_gemma":[0.002699986,0.001281346,0.00120067,0.001174995,0.0006563169,0.0008336814,0.001506507,0.002381075,0.0238699],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006162614,"about_ca_system_score_gemma":0.001987948,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001730818,"about_ca_topic_score_gemma":0.005002111,"domain_scores_codex":[0.9972379,0.0006282533,0.0002332942,0.0007664941,0.0007971164,0.0003369216],"domain_scores_gemma":[0.9991682,0.0001811214,0.00005396875,0.000238692,0.0002930649,0.00006504364],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006839427,0.0002331716,0.001330893,0.00148242,0.0001137403,0.0005106878,0.0007209051,0.002474211,0.8393323,0.008389604,0.06156613,0.08316187],"study_design_scores_gemma":[0.0002432331,0.0006579102,0.002822548,0.0003618172,0.000110123,0.0007773623,0.0001526293,0.01281333,0.4585472,0.004319153,0.518964,0.0002307007],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.04568024,0.003032513,0.8096761,0.0006653658,0.0009022916,0.01113934,0.05370844,0.02098306,0.05421259],"genre_scores_gemma":[0.04862651,0.002226306,0.7422749,0.001554767,0.0001275646,0.01971311,0.1266073,0.006024109,0.0528454],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.02816726,"threshold_uncertainty_score":0.0942288,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.3980576597539626,"score_gpt":0.383712216753682,"score_spread":0.01434544300028057,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}