{"id":"W4385780925","doi":"10.1038/s41396-023-01491-0","title":"Viruses in deep-sea cold seep sediments harbor diverse survival mechanisms and remain genetically conserved within species","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Key Research and Development Program of China; State Key Laboratory of Marine Geology; Tongji University; Natural Science Foundation of Fujian Province; China Postdoctoral Science Foundation","keywords":"Biology; Cold seep; Ecology; Adaptation (eye); Phylum; Host (biology); Microbial ecology; Evolutionary biology; Gene; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001439654,0.0002590392,0.0002396924,0.0006716819,0.0006971738,0.0005520926,0.0001517455,0.0003111926,0.0005970215],"category_scores_gemma":[0.0002090776,0.0001478541,0.0002138307,0.0006134488,0.000436814,0.0005757199,0.0005179925,0.0002872654,0.0001392185],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003482975,"about_ca_system_score_gemma":0.0003838692,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004361473,"about_ca_topic_score_gemma":0.008329265,"domain_scores_codex":[0.9998685,0.000008324987,0.000007182161,0.00005471787,0.00002359859,0.00003764102],"domain_scores_gemma":[0.9998289,0.00001873148,0.00007235014,0.0000104433,0.00003500603,0.00003443388],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001622389,0.00002564059,0.6952775,0.0001314193,0.00004961413,0.000228417,0.001563431,0.0004698691,0.2871571,0.0003713385,0.00007338306,0.01449008],"study_design_scores_gemma":[0.000003258975,0.00009259361,0.9899025,0.00001853901,0.00002490313,0.000232446,0.001456641,0.0004866841,0.00611735,0.0002306727,0.001422652,0.00001175671],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990729,0.0002953911,0.0001864121,0.0000083913,0.000002193375,0.000002994665,0.00007760266,0.000002819711,0.0003513184],"genre_scores_gemma":[0.9988586,0.0002102572,0.0003486568,0.00001637117,0.000003188312,0.000004391374,0.0002207797,0.000002834878,0.0003349318],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004361473,"threshold_uncertainty_score":0.008672178,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02893735707382094,"score_gpt":0.2488314348091895,"score_spread":0.2198940777353686,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}