{"id":"W4385873040","doi":"10.1101/2023.08.12.23293895","title":"Longitudinal genomic surveillance of multidrug-resistant <i>Escherichia coli</i> carriage in critical care patients","year":2023,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Carriage; Escherichia coli; Multiple drug resistance; Colonization; Strain (injury); Antibiotic resistance; Biology; Microbiology; Medicine; Intensive care unit; Gene; Drug resistance; Antibiotics; Internal medicine; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004165588,0.0001687441,0.0001983702,0.0007563046,0.000298204,0.0005218245,0.000233035,0.0003502431,0.0007205873],"category_scores_gemma":[0.00138315,0.0001200193,0.0001683459,0.0007062858,0.0001379319,0.0003191972,0.0003885748,0.0002861423,0.0001332372],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003919896,"about_ca_system_score_gemma":0.000334234,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006903839,"about_ca_topic_score_gemma":0.005316548,"domain_scores_codex":[0.9996977,0.00008293397,0.00002557567,0.00008559562,0.00003622025,0.00007195361],"domain_scores_gemma":[0.99892,0.0001360928,0.0004389563,0.00005013279,0.0002349048,0.0002199598],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006638383,0.0000219051,0.9973248,0.000006906497,0.00001379546,0.00005717636,0.00008209451,0.00003374316,0.000899987,0.000009916506,0.000108793,0.001374394],"study_design_scores_gemma":[0.000003638532,0.0001144626,0.9986948,0.000006149526,0.00001138091,0.0001422674,0.0003163223,0.0002216939,0.0002440527,0.00001111876,0.0002312686,0.000002834776],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992977,0.00007304717,0.00007155415,0.00004475243,0.000002434158,0.000005696327,0.0003763112,0.00000317944,0.000125378],"genre_scores_gemma":[0.9991962,0.00004650191,0.0001429321,0.00004062499,0.000007626356,0.000007856609,0.000505224,0.000001355434,0.00005157709],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006903839,"threshold_uncertainty_score":0.01372731,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02463977810668314,"score_gpt":0.2953234787121797,"score_spread":0.2706837006054965,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}