{"id":"W4385898811","doi":"10.1007/s12602-023-10136-9","title":"The Influence of Protein Secretomes of Enterococcus durans on ex vivo Human Gut Microbiome","year":2023,"lang":"en","type":"article","venue":"Probiotics and Antimicrobial Proteins","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Ottawa","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Natural Sciences and Engineering Research Council of Canada; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Government of Canada","keywords":"Bacteroidetes; Firmicutes; Biology; Microbiome; Probiotic; Bacteroides; Metaproteomics; Microbiology; Ex vivo; Bifidobacterium; Bacteroides thetaiotaomicron; Gut flora; Bacteria; Proteobacteria; Metagenomics; Biochemistry; Lactobacillus; In vitro; Gene; Bioinformatics; 16S ribosomal RNA; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000322005,0.0002388472,0.0002854746,0.0001141259,0.000282317,0.00003768417,0.0003236647,0.0001861827,0.00000425618],"category_scores_gemma":[0.00004237691,0.0001831426,0.0001169328,0.0002507661,0.0004289008,0.000006466017,0.0002191034,0.0001560974,0.000007590548],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001073564,"about_ca_system_score_gemma":0.00009345375,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005170019,"about_ca_topic_score_gemma":0.00006076825,"domain_scores_codex":[0.9985286,0.00007322066,0.0004958621,0.0003836887,0.0001018822,0.0004167198],"domain_scores_gemma":[0.9990692,0.00001439964,0.0002779293,0.0004128047,0.0001517228,0.00007401743],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001141255,0.0001015833,0.0004631999,0.0004686832,0.00004857244,0.000001792727,0.0001232471,0.00005535634,0.9975263,0.0003861395,0.0005547931,0.000156203],"study_design_scores_gemma":[0.0006413991,0.0007549504,0.007947353,0.0002982428,0.00001340362,0.000008619267,0.00003595957,0.000004769501,0.9857928,0.00006021723,0.004236999,0.0002052811],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977996,0.00009499409,0.00001852979,0.0004385531,0.00005422057,0.001254682,0.0001992929,0.00002239171,0.0001176767],"genre_scores_gemma":[0.9983498,0.0002965224,0.0002200547,0.0001014482,0.00006355464,0.00001558446,0.00007079802,0.00003317824,0.0008490511],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0117335,"threshold_uncertainty_score":0.746834,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007817184112946726,"score_gpt":0.2502621727165047,"score_spread":0.242444988603558,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}