{"id":"W4385978269","doi":"10.3390/ijms241612914","title":"Genomic Scan for Runs of Homozygosity and Selective Signature Analysis to Identify Candidate Genes in Large White Pigs","year":2023,"lang":"en","type":"article","venue":"International Journal of Molecular Sciences","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Government of Jiangsu Province","keywords":"Candidate gene; Biology; Genetics; Runs of Homozygosity; Locus (genetics); Fixation index; Gene; Large white; Selective sweep; White (mutation); Allele; Genotype; Single-nucleotide polymorphism; Haplotype; Microsatellite","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004259881,0.0002723155,0.0004237541,0.001229585,0.0004059384,0.0003937574,0.0002783081,0.0002617046,0.003433906],"category_scores_gemma":[0.0008817057,0.0001324215,0.0007966032,0.00118551,0.0001688954,0.00009403814,0.0002904994,0.0002498225,0.0004307527],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001592389,"about_ca_system_score_gemma":0.000518162,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002719718,"about_ca_topic_score_gemma":0.004957552,"domain_scores_codex":[0.9997273,0.00002835728,0.00001927562,0.0001246385,0.00005071862,0.00004960571],"domain_scores_gemma":[0.9995456,0.0001837842,0.00009337087,0.00003549349,0.00004552251,0.00009610801],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002514261,0.0002137002,0.6096401,0.0003910757,0.0009132729,0.00582964,0.0008204851,0.00139155,0.3012285,0.0008507798,0.001820619,0.07438596],"study_design_scores_gemma":[0.00005610553,0.000289363,0.9769977,0.00002627841,0.000429486,0.002010523,0.0002721754,0.004632752,0.01153196,0.0002975927,0.00343257,0.00002351862],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989064,0.0003547748,0.007207911,0.00003612393,0.00001153613,0.00005960073,0.002143319,0.0001592305,0.0009635381],"genre_scores_gemma":[0.9834496,0.0001204603,0.01041067,0.00004901298,0.00001116491,0.0001152661,0.004597194,0.00005167002,0.001195042],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003433906,"threshold_uncertainty_score":0.0114876,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008918129035834325,"score_gpt":0.302085592294536,"score_spread":0.2931674632587016,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}