{"id":"W4385984513","doi":"10.1101/2023.08.17.552973","title":"Intracellular <i>Pseudomonas aeruginosa</i> within the airway epithelium of Cystic Fibrosis lung tissues","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Centre Hospitalier de l’Université de Montréal; Université de Montréal; McGill University Health Centre","funders":"Cystic Fibrosis Canada; McGill University Health Centre","keywords":"Cystic fibrosis; Intracellular; Lung; Pseudomonas aeruginosa; Respiratory epithelium; Biology; Lung transplantation; Intracellular parasite; Epithelium; Pathology; Microbiology; Airway; Extracellular; Immunology; Bacteria; Medicine; Cell biology; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002072733,0.0001888592,0.0001743895,0.000368418,0.0002782922,0.0004960768,0.0001250805,0.0003100785,0.001555166],"category_scores_gemma":[0.000195363,0.0001108576,0.0001152608,0.0002117929,0.0003341836,0.0002639822,0.0002735378,0.0003188757,0.0003898011],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001591415,"about_ca_system_score_gemma":0.0002089857,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001121351,"about_ca_topic_score_gemma":0.0007582194,"domain_scores_codex":[0.999778,0.00003163281,0.00001994866,0.00006816007,0.00006176464,0.00004055247],"domain_scores_gemma":[0.9998086,0.00004353508,0.00005267133,0.00002321721,0.00004084855,0.00003115333],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005783387,0.00001217605,0.005557896,0.0000770851,0.000005316899,0.000194024,0.00007879641,0.00004651312,0.9908531,0.0000602423,0.00007519932,0.00298182],"study_design_scores_gemma":[0.00001352074,0.0005241372,0.2691131,0.00009194785,0.0000551911,0.004897384,0.0009724595,0.002659697,0.7157821,0.0003023287,0.005570171,0.00001796282],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9892994,0.001947233,0.006114766,0.0001367827,0.00001963384,0.00004081996,0.0004447001,0.0001180487,0.001878707],"genre_scores_gemma":[0.9919218,0.0006826352,0.005760518,0.00006121807,0.00001634238,0.00004710344,0.0004458559,0.00001984282,0.001044697],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001555166,"threshold_uncertainty_score":0.005202591,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00913749850227247,"score_gpt":0.2113775922270698,"score_spread":0.2022400937247974,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}