{"id":"W4386070393","doi":"10.3390/epigenomes7030019","title":"Multiomics Data Analysis Identified CpG Sites That Mediate the Impact of Smoking on Cardiometabolic Traits","year":2023,"lang":"en","type":"article","venue":"Epigenomes","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Alliance de recherche numérique du Canada","keywords":"Expression quantitative trait loci; CpG site; Epigenome; Biology; Quantitative trait locus; Gene; SNP; DNA methylation; Genome-wide association study; Genetic association; Genetics; Bioinformatics; Computational biology; Gene expression; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003798511,0.0001067662,0.0001929133,0.000171639,0.0000955063,0.00003211531,0.0004991482,0.00005817214,0.00003470004],"category_scores_gemma":[0.00005926337,0.00007158358,0.0002245691,0.0007264504,0.00005894211,0.000005402152,0.000142164,0.00004926675,0.000009554439],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001182703,"about_ca_system_score_gemma":0.00005114988,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001527542,"about_ca_topic_score_gemma":0.00007934625,"domain_scores_codex":[0.9991673,0.00005715472,0.0001581811,0.0002995908,0.0001407757,0.0001769572],"domain_scores_gemma":[0.9988933,0.00003113693,0.0001054467,0.0008871832,0.0000446976,0.00003818599],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009578155,0.0001148799,0.1564495,0.00002366581,0.009318039,0.000003969285,0.001018312,0.04061322,0.741752,0.0001461647,0.01010107,0.04036342],"study_design_scores_gemma":[0.0002380665,0.00003893757,0.9621611,0.000002704259,0.0003675436,5.281888e-7,0.0002441417,0.001444845,0.03008874,0.00005869844,0.005200977,0.0001537385],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967567,0.001711937,0.0004651386,0.00008036867,0.00007549173,0.0001020432,0.0005772366,0.00001202422,0.0002191007],"genre_scores_gemma":[0.9961429,0.001886561,0.00002236693,0.00002233304,0.0001660227,0.00002106734,0.001318205,0.00001372202,0.0004068523],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8057116,"threshold_uncertainty_score":0.2919094,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08773305790152308,"score_gpt":0.3596908812508949,"score_spread":0.2719578233493719,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}