{"id":"W4386084752","doi":"10.1111/tid.14136","title":"Systematic fungal biomarker or polymerase chain reaction testing in lung transplant recipients: Retrospective analysis to optimize their use","year":2023,"lang":"en","type":"article","venue":"Transplant Infectious Disease","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"National Center for Advancing Translational Sciences","keywords":"Medicine; Pneumocystis jirovecii; Internal medicine; Galactomannan; Pneumonia; Aspergillosis; Gastroenterology; Immunology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004414509,0.0005042555,0.001000392,0.001947698,0.0002239618,0.00008506147,0.00009762049,0.0001323697,0.00005482242],"category_scores_gemma":[0.0003266327,0.0003807677,0.000436508,0.005036789,0.00004016834,0.00022985,0.00001516678,0.0002845715,0.0001033162],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007568178,"about_ca_system_score_gemma":0.000142908,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008160326,"about_ca_topic_score_gemma":0.001081815,"domain_scores_codex":[0.9969236,0.0002848693,0.0008105004,0.0008162468,0.0005133023,0.00065148],"domain_scores_gemma":[0.997767,0.000584644,0.0001637638,0.0005662942,0.0001173429,0.0008010103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003963072,0.001058146,0.9701068,0.002449555,0.002892621,0.005215753,0.001254477,0.001788396,0.01102349,0.00001438997,0.00002300565,0.000210332],"study_design_scores_gemma":[0.003122334,0.0003650109,0.9587472,0.00358952,0.004892336,0.0003710285,0.00007979813,0.02802587,0.0003755886,0.00000770659,0.000002944949,0.0004206577],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941344,0.00007584353,0.001118669,0.000241562,0.0003307989,0.002248209,0.0008662615,0.0008247979,0.0001595067],"genre_scores_gemma":[0.9979891,0.000181479,0.00004070945,0.0002328888,0.00005138999,0.0007149858,0.0003303905,0.00006772861,0.0003913709],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02623747,"threshold_uncertainty_score":0.9998644,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02917441474952032,"score_gpt":0.2725394458983974,"score_spread":0.2433650311488771,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}