{"id":"W4386153683","doi":"10.1128/msystems.00491-23","title":"Quantitative proteomics reveals unique responses to antimicrobial treatments in clinical <i>Pseudomonas aeruginosa</i> isolates","year":2023,"lang":"en","type":"article","venue":"mSystems","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Bioinformatics Solutions (Canada); University of Guelph","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Pseudomonas aeruginosa; Proteome; Tobramycin; Biology; Microbiology; Proteomics; Carbenicillin; Antibiotic resistance; Antibiotics; Bacteria; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003005891,0.0003360492,0.0003560772,0.0004664237,0.0002433127,0.0005312878,0.000203535,0.0004952897,0.001232629],"category_scores_gemma":[0.0009391145,0.0001408492,0.0002616449,0.0004619386,0.000287806,0.0002464043,0.000321054,0.0004349552,0.000330283],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002209103,"about_ca_system_score_gemma":0.000124608,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000972297,"about_ca_topic_score_gemma":0.0007676193,"domain_scores_codex":[0.9996038,0.00006373871,0.00003921484,0.0001023289,0.0001185908,0.00007235668],"domain_scores_gemma":[0.9994714,0.0001155537,0.0001749285,0.00003208822,0.0001498572,0.00005619254],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002836588,0.00005037245,0.01429019,0.00007816949,0.0000219805,0.0001733771,0.00007273375,0.0000491068,0.9827316,0.00001539158,0.0001433135,0.002090173],"study_design_scores_gemma":[0.00002613784,0.001139234,0.68223,0.00002301552,0.0000836667,0.002778549,0.0007076743,0.001557127,0.3096133,0.00008373471,0.001730728,0.00002679285],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977618,0.0002611712,0.0006232294,0.00009919022,0.000006235106,0.00002145192,0.0007995701,0.0000316762,0.000395707],"genre_scores_gemma":[0.9956382,0.0001671789,0.001896206,0.0001045573,0.00001550624,0.00003901593,0.001643934,0.00001647584,0.0004789138],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001232629,"threshold_uncertainty_score":0.004123509,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03556048914097606,"score_gpt":0.3303231181179006,"score_spread":0.2947626289769245,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}