{"id":"W4386324363","doi":"10.3390/jof9090894","title":"Compensatory Base Changes in ITS2 Secondary Structure Alignment, Modelling, and Molecular Phylogeny: An Integrated Approach to Improve Species Delimitation in Tulasnella (Basidiomycota)","year":2023,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"Universidad Técnica Particular de Loja","keywords":"Biology; Monophyly; Internal transcribed spacer; Phylogenetic tree; Clade; Basidiomycota; Evolutionary biology; Phylogenetics; Botany; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002764643,0.001432631,0.001244931,0.002126772,0.0007156634,0.001468704,0.001037974,0.0008782859,0.001984351],"category_scores_gemma":[0.00493098,0.0005838383,0.001538247,0.001938323,0.0003328663,0.001509416,0.000865073,0.001077769,0.0009650288],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005241066,"about_ca_system_score_gemma":0.0008889438,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001452608,"about_ca_topic_score_gemma":0.002350613,"domain_scores_codex":[0.9987734,0.0004822353,0.00008721479,0.0003909236,0.0002044465,0.00006172058],"domain_scores_gemma":[0.9986346,0.0005916124,0.0003205468,0.0001239517,0.0002291511,0.0001000458],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002346263,0.0008045911,0.08109663,0.002293588,0.001482363,0.0009994465,0.001681647,0.2359665,0.2389236,0.007161527,0.00313983,0.424104],"study_design_scores_gemma":[0.00005752151,0.0004064695,0.01534058,0.0001329708,0.0004473429,0.0003758601,0.0002209711,0.9523756,0.02188553,0.003807419,0.004844769,0.0001050366],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.4523807,0.001814718,0.5351363,0.0002811626,0.0001124889,0.0002050857,0.001423675,0.006324787,0.002321056],"genre_scores_gemma":[0.6091506,0.0005081408,0.3862623,0.00006577963,0.00003378133,0.0003083439,0.002332422,0.0007607106,0.0005779481],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.002764643,"threshold_uncertainty_score":0.01462102,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02329059557798883,"score_gpt":0.2197588272930258,"score_spread":0.196468231715037,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}