{"id":"W4386345692","doi":"10.1093/ofid/ofad451","title":"Proteomic Profiling of Urine From Hospitalized Patients With Severe Pneumonia due to SARS-CoV-2 vs Other Causes: A Preliminary Report","year":2023,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"COVID-19 Clinical Research Studies","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fonds de recherche du Québec; International Development Research Centre; UK Research and Innovation; National Research Foundation; Newton Fund; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Pneumonia; Medicine; Coronavirus disease 2019 (COVID-19); Proteome; Urine; Coronavirus; Biomarker; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Biomarker discovery; 2019-20 coronavirus outbreak; Viral pneumonia; Immunology; Proteomics; Internal medicine; Disease; Infectious disease (medical specialty); Virology; Bioinformatics; Outbreak; Gene; Biology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004256415,0.000257956,0.0003773776,0.0007880935,0.0004036888,0.0007645062,0.0001496016,0.0003417126,0.0007947455],"category_scores_gemma":[0.0009125428,0.0001094142,0.0003236317,0.0006375545,0.000200692,0.000191353,0.000364753,0.000252346,0.0001659505],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001398932,"about_ca_system_score_gemma":0.0002575399,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008968992,"about_ca_topic_score_gemma":0.001247889,"domain_scores_codex":[0.9996586,0.00007475052,0.00005240446,0.00006833825,0.00008867993,0.00005722736],"domain_scores_gemma":[0.9997279,0.00005267592,0.00006254615,0.00001586233,0.00008624374,0.00005469651],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003164363,0.0004065284,0.7467743,0.000452122,0.0004574293,0.002283032,0.000708427,0.0001592813,0.2152102,0.000105395,0.0007858618,0.02949301],"study_design_scores_gemma":[0.00002243365,0.0008671947,0.9714395,0.00003526853,0.0001409667,0.00297004,0.0006242482,0.000632153,0.02185803,0.00006592297,0.001329041,0.00001510441],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972906,0.001177349,0.0003364364,0.00006057964,0.00003107226,0.00002296221,0.0007010466,0.0000148149,0.0003651624],"genre_scores_gemma":[0.9975404,0.0004421889,0.0006912444,0.00009414817,0.00002788115,0.00001390728,0.0009192339,0.000003981889,0.0002671415],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008968992,"threshold_uncertainty_score":0.002658665,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02404930092552103,"score_gpt":0.3652680995036603,"score_spread":0.3412187985781392,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}