{"id":"W4386470332","doi":"10.1002/ajb2.16241","title":"Phylogenomic and morphological data reveal hidden patterns of diversity in the national tree of Brazil, <i>Paubrasilia echinata</i>","year":2023,"lang":"en","type":"article","venue":"American Journal of Botany","topic":"Plant Diversity and Evolution","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Biology; Genetic diversity; Coalescent theory; Endangered species; Phylogenetic tree; Herbarium; Evolutionary biology; Taxon; Population; Species complex; Ecology; Habitat","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007048859,0.00005294313,0.0001781371,0.0000272218,0.00007569572,0.000006478582,0.0005407606,0.00002353418,0.00001696753],"category_scores_gemma":[0.00007046721,0.00002062411,0.00004267083,0.0003045472,0.0001520096,0.0001288775,0.0003105551,0.0001093593,0.000001836983],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001331506,"about_ca_system_score_gemma":0.000008357966,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004924356,"about_ca_topic_score_gemma":0.0002652555,"domain_scores_codex":[0.9992083,0.0001247928,0.0001883457,0.00009873287,0.0002789613,0.0001008236],"domain_scores_gemma":[0.9993355,0.0002711774,0.0002778885,0.00003738155,0.00004663321,0.00003141482],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001343847,0.00008640556,0.8892426,0.000004072619,0.00002413611,0.00004755953,0.0002687084,0.000004287025,0.08642019,0.00003162207,0.002824119,0.02091191],"study_design_scores_gemma":[0.0001271294,0.0003301731,0.9976286,0.00001501775,0.00001283417,0.00007120867,0.00126271,0.00003206578,0.00009799605,0.0002159163,0.0001655267,0.00004076924],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983008,0.00003372592,0.000001722558,0.001041236,0.0000260541,0.0000328549,0.0004943996,0.000002756705,0.00006647236],"genre_scores_gemma":[0.9995256,0.0002105716,0.00004425455,0.0001446741,0.00004870243,8.26883e-8,0.00001985176,2.259853e-7,0.000006025015],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.108386,"threshold_uncertainty_score":0.1004877,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06398642132941985,"score_gpt":0.2598533083483991,"score_spread":0.1958668870189793,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}