{"id":"W4386496927","doi":"10.1128/spectrum.01256-23","title":"Analysis of SARS-CoV-2 isolates, namely the Wuhan strain, Delta variant, and Omicron variant, identifies differential immune profiles","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Glycomics Centre; Women and Children’s Health Research Institute; University of Alberta","funders":"Canadian Institutes of Health Research; University of Alberta; Government of Canada","keywords":"Immune system; Biology; Chemokine; Proinflammatory cytokine; Strain (injury); Pathogenesis; CD8; Galectin; Phenotype; Immunology; T cell; Virology; Inflammation; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001288844,0.000250259,0.0002140538,0.0003905855,0.0001676972,0.0002627997,0.00008204042,0.0002095012,0.0008514074],"category_scores_gemma":[0.0002167601,0.00007786866,0.0002149927,0.0003105631,0.000133448,0.0001451914,0.0002527835,0.0002144487,0.0001406697],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001039816,"about_ca_system_score_gemma":0.0000850331,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001045367,"about_ca_topic_score_gemma":0.001217076,"domain_scores_codex":[0.9998667,0.00001777267,0.00001808577,0.00003865306,0.00002620022,0.00003254299],"domain_scores_gemma":[0.999904,0.0000104541,0.00003585624,0.00001133859,0.00001956126,0.00001870108],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008861074,0.00008119622,0.3198653,0.00008842207,0.00009184037,0.0005325977,0.0003228206,0.0001089065,0.6713141,0.0000959418,0.0001272907,0.006485395],"study_design_scores_gemma":[0.000008513758,0.0004276825,0.9638182,0.00001305602,0.0000411599,0.001796197,0.0005014385,0.0005653733,0.0319922,0.000069949,0.0007570367,0.000009218025],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994925,0.00007924133,0.0001124493,0.000005956457,0.000002570204,0.000008898401,0.0001453085,0.000001998656,0.0001510139],"genre_scores_gemma":[0.999062,0.00004797539,0.0002887103,0.00001529454,0.000003375701,0.000009849981,0.0003635669,0.000002346718,0.000206877],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001045367,"threshold_uncertainty_score":0.002848208,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02796419100847488,"score_gpt":0.3085445726545809,"score_spread":0.280580381646106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}