{"id":"W4386523571","doi":"10.1371/journal.pone.0291109","title":"Genetic diversity of Salmonella enterica isolated over 13 years from raw California almonds and from an almond orchard","year":2023,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Université Laval; University of Guelph","funders":"Génome Québec; Genome Canada; Almond Board of California","keywords":"Salmonella; Biology; Virulence; Salmonella enterica; Plasmid; Serotype; Microbiology; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001919039,0.0002463193,0.000213678,0.001522827,0.0005669289,0.0005971558,0.0002338473,0.0002331383,0.0006692691],"category_scores_gemma":[0.0003126599,0.0001588971,0.0002102266,0.001144229,0.0002473177,0.0001487261,0.0002593211,0.0001841587,0.0001212471],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001099228,"about_ca_system_score_gemma":0.0004890384,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.09049597,"about_ca_topic_score_gemma":0.193547,"domain_scores_codex":[0.9997489,0.00001437671,0.00001556891,0.0001106081,0.00006463197,0.00004597324],"domain_scores_gemma":[0.9995251,0.00004549059,0.000146619,0.00001749161,0.0001564486,0.0001087892],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003943812,0.00008190169,0.9491699,0.00005729466,0.0000801717,0.0003662247,0.001094195,0.0001281535,0.04332146,0.00002769199,0.0001427872,0.005135878],"study_design_scores_gemma":[0.000001192928,0.0000479132,0.9991361,0.000002920197,0.00000715349,0.000054048,0.0002575856,0.00003072803,0.0002961415,0.000001196768,0.0001632672,0.000001682896],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993708,0.00004851541,0.00002132178,0.000003299856,9.652194e-7,0.000005616377,0.0003515509,0.000001344865,0.0001966642],"genre_scores_gemma":[0.9970765,0.0001202791,0.0003027443,0.00001727188,0.000002995706,0.00001032723,0.001871158,0.000002560556,0.000596192],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09049597,"threshold_uncertainty_score":0.1799384,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04702216055991179,"score_gpt":0.2202449012433788,"score_spread":0.173222740683467,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}