{"id":"W4386573853","doi":"10.1038/s41597-023-02488-2","title":"One high quality genome and two transcriptome datasets for new species of Mantamonas, a deep-branching eukaryote clade","year":2023,"lang":"en","type":"article","venue":"Scientific Data","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"European Commission; Government of Canada; Simons Foundation","keywords":"Clade; Eukaryote; Biology; Evolutionary biology; Transcriptome; Genome; Branching (polymer chemistry); Computational biology; Phylogenetics; Gene; Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006895005,0.00009658092,0.000154019,0.00006592696,0.0002021014,0.00008165016,0.0008304245,0.00005442307,0.00003450559],"category_scores_gemma":[0.000080281,0.000105801,0.00003736482,0.0001929495,0.0002353862,0.00002235671,0.0006929472,0.00005004954,0.00001540885],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004465819,"about_ca_system_score_gemma":0.00006382695,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000133152,"about_ca_topic_score_gemma":0.0001947863,"domain_scores_codex":[0.9987368,0.00004327919,0.0001884342,0.0006255512,0.0001699026,0.0002360448],"domain_scores_gemma":[0.9986745,0.00002004638,0.0000717812,0.00110742,0.00002949763,0.00009672686],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009020833,0.00003731895,0.0008398239,0.000119062,0.00006337609,0.000001456013,0.000118938,0.00000713259,0.9648261,0.0005863413,0.03127276,0.002037468],"study_design_scores_gemma":[0.00313796,0.0001882366,0.3761528,0.00004760329,0.0001552045,0.000004919454,0.0003000603,0.0002075692,0.186838,0.004357508,0.4279808,0.0006293177],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8696842,0.0009209785,0.008126562,0.0003478764,0.000642157,0.0005045659,0.1196073,0.00002587902,0.0001405346],"genre_scores_gemma":[0.8434536,0.0000973507,0.003213607,0.00008939058,0.0001856491,0.000003995096,0.1504553,0.00001173846,0.002489352],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7779881,"threshold_uncertainty_score":0.4314439,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08410650693930481,"score_gpt":0.3129157311745487,"score_spread":0.2288092242352439,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}