{"id":"W4386590247","doi":"10.1038/s42003-023-05307-x","title":"Insights from multi-omics integration into seed germination of Taxus chinensis var mairei","year":2023,"lang":"en","type":"article","venue":"Communications Biology","topic":"Seed Germination and Physiology","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia; University of Victoria","funders":"National Natural Science Foundation of China","keywords":"Germination; Biology; Abscisic acid; Metabolome; Taxus; Dormancy; Pentose phosphate pathway; Transcriptome; Metabolomics; Botany; Biochemistry; Glycolysis; Metabolism; Bioinformatics; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001259489,0.0004393774,0.0004176749,0.001081513,0.0003507076,0.0006835454,0.0001432334,0.0001996181,0.0006873191],"category_scores_gemma":[0.0001300997,0.0001643161,0.0005117028,0.0009299426,0.0001678546,0.000421114,0.0004503404,0.000307325,0.0001791128],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003015981,"about_ca_system_score_gemma":0.0003558422,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002830384,"about_ca_topic_score_gemma":0.005225707,"domain_scores_codex":[0.9999293,0.000006502162,0.000004998697,0.00002761197,0.00001780788,0.00001382249],"domain_scores_gemma":[0.9999306,0.00001072952,0.00002020656,0.000007521682,0.00001779025,0.00001315655],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002391084,0.00001743245,0.01711496,0.0002247401,0.0001047294,0.0002063206,0.0001379306,0.0005624326,0.9712811,0.0001962779,0.0001981509,0.009716794],"study_design_scores_gemma":[0.00002071865,0.000129229,0.8554335,0.00006518105,0.0003483926,0.0006049299,0.0006986319,0.01292405,0.1205926,0.001297596,0.007827166,0.00005792624],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9840693,0.002614842,0.006176795,0.0001732055,0.00001612702,0.00002859231,0.005459129,0.0001515582,0.001310563],"genre_scores_gemma":[0.9806572,0.00151206,0.007721402,0.0001272577,0.00001249396,0.00004489946,0.008628527,0.00006389879,0.001232224],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002830384,"threshold_uncertainty_score":0.005627811,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05161314386432065,"score_gpt":0.3008520317047891,"score_spread":0.2492388878404684,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}