{"id":"W4386591208","doi":"10.1093/gbe/evad164","title":"Evolution of an Alternative Genetic Code in the <i>Providencia</i> Symbiont of the Hematophagous Leech <i>Haementeria acuecueyetzin</i>","year":2023,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Leech Biology and Applications","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Universidad Nacional Autónoma de México; European Commission","keywords":"Biology; Genome; Evolutionary biology; Lineage (genetic); Providencia; Leech; Synteny; Buchnera; Symbiotic bacteria; Genetics; Zoology; Symbiosis; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004199531,0.0000894886,0.000181835,0.00006905474,0.0001041412,0.00000173757,0.0001707661,0.0001391403,0.000004756556],"category_scores_gemma":[0.00004491752,0.00005277378,0.00004715934,0.0003471861,0.0003452406,0.00003282743,0.00006442804,0.0001235636,0.000006889265],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006579982,"about_ca_system_score_gemma":0.00007005842,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003854507,"about_ca_topic_score_gemma":0.0002812592,"domain_scores_codex":[0.9990985,0.0001889102,0.0002747159,0.0002033777,0.00006826357,0.0001662175],"domain_scores_gemma":[0.9994306,0.00005960912,0.0001390168,0.0002860055,0.00006078807,0.00002399645],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001705188,0.0001832503,0.3798624,0.00006589341,0.00004825037,0.000003273109,0.0008850198,0.00003724105,0.6061894,0.01189551,0.00008000944,0.0005793179],"study_design_scores_gemma":[0.000583735,0.0003186247,0.9833027,0.00002542906,0.00004723595,0.0000659741,0.0005117489,0.0003162775,0.005397684,0.009096993,0.0002779922,0.00005563117],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971645,0.0008756807,0.0004378266,0.0006958322,0.0001096476,0.0005188417,0.00008801795,0.00001781967,0.00009176394],"genre_scores_gemma":[0.9993559,0.0001392038,0.0001172227,0.0001388163,0.00007010825,0.00007306498,0.00006986366,0.000004548589,0.00003130626],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6034403,"threshold_uncertainty_score":0.2152052,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01646984700104057,"score_gpt":0.2877187094072188,"score_spread":0.2712488624061783,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}