{"id":"W4386602148","doi":"10.1101/2023.09.07.556668","title":"Large-scale phenotypic and genomic characterization of <i>Listeria monocytogenes</i> susceptibility to quaternary ammonium compounds","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Canada","funders":"Mejeribrugets ForskningsFond; Oregon State University","keywords":"Listeria monocytogenes; Biology; Genotype; Microbiology; Plasmid; Broth microdilution; Replicon; Genome; Virulence; Gene; Genetics; Bacteria; Minimum inhibitory concentration; Antimicrobial","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006047642,0.0004206689,0.0004617409,0.001086953,0.0003199253,0.0008228159,0.0003782129,0.0003713357,0.0009327364],"category_scores_gemma":[0.001034457,0.0001987726,0.0007895552,0.001358422,0.0001963509,0.0002456124,0.0007259824,0.0005148331,0.0008080543],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000299008,"about_ca_system_score_gemma":0.0003600494,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002815712,"about_ca_topic_score_gemma":0.002738282,"domain_scores_codex":[0.9992782,0.0001038671,0.00006196143,0.0002773677,0.000170915,0.0001076372],"domain_scores_gemma":[0.9990133,0.0001519891,0.0003337642,0.0001169786,0.0002974974,0.00008636327],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000960013,0.0002299445,0.2476431,0.0006148221,0.0002842541,0.0002807619,0.0006121938,0.001023693,0.7201788,0.0001322438,0.00297763,0.02506259],"study_design_scores_gemma":[0.00003673403,0.0006471188,0.9282095,0.0001031988,0.0002012629,0.0007973605,0.0007396781,0.001665016,0.05558607,0.00008742835,0.01188254,0.00004412025],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9662575,0.0004923949,0.001880733,0.0001007679,0.0000143683,0.00005167358,0.03012018,0.0001175611,0.0009648011],"genre_scores_gemma":[0.8930848,0.0004159466,0.007961933,0.0002568937,0.00002882949,0.0001221431,0.09712906,0.0001178681,0.0008825911],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002815712,"threshold_uncertainty_score":0.005598664,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03613535937069787,"score_gpt":0.2665861752508029,"score_spread":0.230450815880105,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}