{"id":"W4386617875","doi":"10.1007/s00003-023-01455-8","title":"Whole-genome sequencing of Salmonella serotypes recovered longitudinally from broiler production, processing, and retailing in Trinidad and Tobago","year":2023,"lang":"en","type":"article","venue":"Journal of Consumer Protection and Food Safety","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"University of the West Indies, St. Augustine Campus; Public Health Agency; Public Health Agency of Canada","keywords":"Broiler; Salmonella; Serotype; Biology; Veterinary medicine; Whole genome sequencing; Sampling (signal processing); DNA sequencing; Biotechnology; Genome; Gene; Food science; Microbiology; Genetics; Bacteria; Engineering; Medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008661679,0.0001135094,0.0003333298,0.00006150851,0.00010958,0.00002833313,0.00005549296,0.0001123889,0.00001177047],"category_scores_gemma":[0.0002782357,0.00005509437,0.00004112496,0.000318241,0.00009141525,0.0001818292,0.00003759294,0.000215157,9.351406e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002381581,"about_ca_system_score_gemma":0.00002807287,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001216447,"about_ca_topic_score_gemma":0.0002985625,"domain_scores_codex":[0.9988284,0.0001593182,0.0005328551,0.0002206924,0.0001108272,0.0001479324],"domain_scores_gemma":[0.999248,0.0001111163,0.0003875273,0.00003337358,0.0001347227,0.00008531757],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006132976,0.00003300923,0.1764225,0.00007348526,0.00007821122,0.000006448093,0.0007348186,0.0000349359,0.6526654,0.000009776311,0.00002232019,0.1693058],"study_design_scores_gemma":[0.0005246948,0.0006942544,0.989705,0.0001965008,0.00003813795,0.0001864673,0.001320845,0.0001326871,0.001829623,0.001575481,0.003633962,0.000162371],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995016,0.003087862,0.00002327533,0.001510619,0.0001000463,0.0002000506,0.00001948916,0.00001522029,0.00002746982],"genre_scores_gemma":[0.9978766,0.00182912,0.00009271583,0.0000346565,0.0001134771,0.000004404153,0.000006220776,0.00000157265,0.00004125199],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8132824,"threshold_uncertainty_score":0.2246683,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04965233107121362,"score_gpt":0.2411224379083053,"score_spread":0.1914701068370917,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}