{"id":"W4386617875","doi":"10.1007/s00003-023-01455-8","title":"Whole-genome sequencing of Salmonella serotypes recovered longitudinally from broiler production, processing, and retailing in Trinidad and Tobago","year":2023,"lang":"en","type":"article","venue":"Journal of Consumer Protection and Food Safety","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"University of the West Indies, St. Augustine Campus; Public Health Agency; Public Health Agency of Canada","keywords":"Broiler; Salmonella; Serotype; Biology; Veterinary medicine; Whole genome sequencing; Sampling (signal processing); DNA sequencing; Biotechnology; Genome; Gene; Food science; Microbiology; Genetics; Bacteria; Engineering; Medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002687851,0.0003932954,0.0002386443,0.001441279,0.0005436355,0.0007031206,0.0003177071,0.0003094338,0.001270286],"category_scores_gemma":[0.0004490031,0.0003028478,0.0003508807,0.00155208,0.0002814748,0.0001421049,0.0007048243,0.0004900637,0.0003354961],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002144074,"about_ca_system_score_gemma":0.002354729,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.4098862,"about_ca_topic_score_gemma":0.6323961,"domain_scores_codex":[0.9997724,0.0000219278,0.00001181052,0.00007755485,0.00004333501,0.00007294329],"domain_scores_gemma":[0.9994741,0.0000466341,0.00009612305,0.0000302567,0.0002701432,0.00008278394],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006773953,0.0001188137,0.8407087,0.0002328821,0.0002550983,0.0004448092,0.00586597,0.001335909,0.1266202,0.000187119,0.003135548,0.02041742],"study_design_scores_gemma":[0.000006195459,0.00003655309,0.99492,0.00002681429,0.00002652996,0.00005204252,0.001722821,0.000217646,0.0006025109,0.00001037394,0.002373992,0.000004494702],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9890755,0.0001418873,0.0003591842,0.00008066649,0.000005959412,0.00003583345,0.009331446,0.00002248248,0.0009469039],"genre_scores_gemma":[0.966879,0.0003340193,0.001644401,0.0002352849,0.00000470854,0.0001114994,0.02503168,0.00004404485,0.005715343],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4098862,"threshold_uncertainty_score":0.8150008,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04965233107121362,"score_gpt":0.2411224379083053,"score_spread":0.1914701068370917,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}