{"id":"W4386647005","doi":"10.1016/j.tube.2023.102409","title":"Type I interferons and Mycobacterium tuberculosis whole cell lysate induce distinct transcriptional responses in M. tuberculosis infection","year":2023,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Public Health Agency; Public Health Agency of Canada","keywords":"Mycobacterium tuberculosis; Tuberculosis; Gene; Interferon; Peripheral blood mononuclear cell; Biology; Immunology; Gene expression; Stimulation; Virology; Medicine; Genetics; In vitro","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003096865,0.0001632896,0.0002838663,0.0002467602,0.0001160865,0.0002862713,0.00007601226,0.0003938777,0.0008280531],"category_scores_gemma":[0.000496447,0.000168172,0.0001943148,0.0002323902,0.0002301053,0.0001179948,0.0001791379,0.0003216769,0.0002045496],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000130655,"about_ca_system_score_gemma":0.00009712587,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001849324,"about_ca_topic_score_gemma":0.0003035601,"domain_scores_codex":[0.9996729,0.0001150332,0.00002616756,0.0000675948,0.00005552053,0.00006274757],"domain_scores_gemma":[0.9997872,0.00006823848,0.00006467298,0.00002529386,0.00002220671,0.000032411],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000821778,0.00008539725,0.0156471,0.00003988588,0.00001168656,0.00005360991,0.0001155041,0.00005247758,0.9813094,0.00003229823,0.00003032822,0.001800533],"study_design_scores_gemma":[0.0000715676,0.002793612,0.7439754,0.00003300813,0.00006122307,0.00103775,0.0005552273,0.0008643265,0.2493655,0.0002087463,0.001021429,0.00001223655],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988545,0.0003288854,0.0003290376,0.00002019207,0.000006088781,0.00001356194,0.0001768624,0.000004905564,0.0002658551],"genre_scores_gemma":[0.9980304,0.0002062082,0.000787504,0.00008453726,0.00001204598,0.00005805635,0.0004190543,0.000003868503,0.0003984424],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008280531,"threshold_uncertainty_score":0.002770126,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03902245372030285,"score_gpt":0.3195103658500073,"score_spread":0.2804879121297045,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}