{"id":"W4386647005","doi":"10.1016/j.tube.2023.102409","title":"Type I interferons and Mycobacterium tuberculosis whole cell lysate induce distinct transcriptional responses in M. tuberculosis infection","year":2023,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Public Health Agency; Public Health Agency of Canada","keywords":"Mycobacterium tuberculosis; Tuberculosis; Gene; Interferon; Peripheral blood mononuclear cell; Biology; Immunology; Gene expression; Stimulation; Virology; Medicine; Genetics; In vitro","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001704391,0.000628942,0.001086688,0.001501526,0.0002794484,0.00009638681,0.0002058854,0.0005443493,0.0005226771],"category_scores_gemma":[0.001222485,0.0005806223,0.0003484983,0.002480906,0.0003506381,0.0004531248,0.0002561812,0.001115871,0.001118584],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004259631,"about_ca_system_score_gemma":0.0002038372,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002211947,"about_ca_topic_score_gemma":0.001077182,"domain_scores_codex":[0.9949594,0.0008533815,0.0010242,0.001162078,0.0006290104,0.00137191],"domain_scores_gemma":[0.9973466,0.0008428881,0.0001239342,0.0007344641,0.0002678677,0.0006842437],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002053431,0.0006900061,0.7260538,0.0008093141,0.0004214322,0.0002006985,0.001111081,0.00002912067,0.2467295,0.0001426206,0.01374084,0.008018065],"study_design_scores_gemma":[0.002019521,0.0009225645,0.9729987,0.0003022127,0.0002846829,0.0001964289,0.0002169054,0.001256263,0.005062179,0.0002424799,0.01592487,0.0005731772],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9778346,0.000690584,0.00001098148,0.01717442,0.0005443984,0.0008250662,0.0001564176,0.0004454611,0.002318099],"genre_scores_gemma":[0.9906459,0.005157715,0.0001684141,0.001214396,0.0003040268,0.0002585117,0.0005401928,0.0001196063,0.001591176],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2469449,"threshold_uncertainty_score":0.9996645,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03902245372030285,"score_gpt":0.3195103658500073,"score_spread":0.2804879121297045,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}