{"id":"W4386703933","doi":"10.1128/msystems.00197-23","title":"Identification of hidden N4-like viruses and their interactions with hosts","year":2023,"lang":"en","type":"article","venue":"mSystems","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Fundamental Research Funds for the Central Universities; National Key Research and Development Program of China; Marine S&T Fund of Shandong Province; Central University Basic Research Fund of China; National Natural Science Foundation of China; Shandong University","keywords":"Biology; Lineage (genetic); Evolutionary biology; Genome; Host (biology); Viral replication; Viral evolution; Identification (biology); Mechanism (biology); Reprogramming; Function (biology); Computational biology; Genetics; Virology; Virus; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007944401,0.00006396566,0.00008377698,0.00003877162,0.0000745179,0.00003433121,0.00006806023,0.00001890878,0.0001926306],"category_scores_gemma":[0.000005525873,0.00004677468,0.00002105103,0.000193202,0.00006195105,0.0001828246,0.00005515661,0.00004571428,0.0004060016],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003229022,"about_ca_system_score_gemma":0.000002846419,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008029842,"about_ca_topic_score_gemma":0.0007128962,"domain_scores_codex":[0.9995381,0.00002304699,0.0001595737,0.0001386284,0.00005186341,0.00008882713],"domain_scores_gemma":[0.9996874,0.00003350413,0.00009415196,0.0001471961,0.000007374827,0.00003031334],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000007446848,0.00001870642,0.004516001,0.00001340064,0.00001363676,9.573911e-7,0.0008884334,0.00001782576,0.9904202,0.00001290199,0.002256038,0.001834469],"study_design_scores_gemma":[0.0003964347,0.0001316151,0.6223119,0.000190787,0.00003632662,0.0001416815,0.004060785,0.001299932,0.2061933,0.00004528633,0.1648663,0.0003256621],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980285,0.0000136341,0.0001369066,0.00009381394,0.0003061024,0.0001340683,0.00002962319,0.00004826345,0.001209103],"genre_scores_gemma":[0.9966664,0.00001232126,0.0000166159,0.00002752468,0.00002397133,0.00002039523,0.000006628663,0.00000872324,0.003217427],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7842268,"threshold_uncertainty_score":0.5218465,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01456027684299463,"score_gpt":0.2456822282334887,"score_spread":0.2311219513904941,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}