{"id":"W4386784391","doi":"10.1158/1557-3265.aacrahns23-po-026","title":"Abstract PO-026: Intra-tumor heterogeneity of HPV integration and its association with focal genomic instability in oropharyngeal cancer","year":2023,"lang":"en","type":"article","venue":"Clinical Cancer Research","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Carcinogenesis; Cancer; Genome instability; Biology; Genome; Somatic cell; Genetics; Cancer research; Phylogenetic tree; Gene; Oncology; Medicine; DNA; DNA damage","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002930734,0.0001989798,0.0001942485,0.001039739,0.0002779886,0.0004852629,0.0002566098,0.0003007477,0.002907571],"category_scores_gemma":[0.0007442927,0.0001427643,0.0002169503,0.0008687493,0.0002878395,0.0002540495,0.0003509193,0.0003518768,0.0003147136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00014423,"about_ca_system_score_gemma":0.0001281898,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001254641,"about_ca_topic_score_gemma":0.0006714883,"domain_scores_codex":[0.9997994,0.00003638642,0.00002299567,0.00005943114,0.00004295148,0.0000388764],"domain_scores_gemma":[0.9993648,0.00009679083,0.0002660637,0.00005455133,0.0000757845,0.0001420343],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008841428,0.00005001916,0.9678131,0.00003917081,0.00009660461,0.000739383,0.000103265,0.00007654738,0.02565785,0.00004750936,0.00007816597,0.004414114],"study_design_scores_gemma":[0.000005570584,0.0001065434,0.9957314,0.000002658387,0.00004202983,0.00150343,0.000114552,0.000228085,0.001995455,0.00004917822,0.0002178956,0.000003138475],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992418,0.0002250409,0.0001773976,0.000009956321,0.000001823478,0.000004239123,0.00009003975,0.000005122168,0.0002446129],"genre_scores_gemma":[0.9997172,0.00003508727,0.00004822421,0.000002772329,0.00000314312,0.000002068611,0.00007393635,0.000002365645,0.0001152555],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002907571,"threshold_uncertainty_score":0.009726822,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09390790174029202,"score_gpt":0.451113365478554,"score_spread":0.357205463738262,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}