{"id":"W4386813884","doi":"10.1111/nph.19264","title":"Haplotype‐resolved genome assembly provides insights into the evolution of <i>S</i>‐locus supergene in distylous <i>Nymphoides indica</i>","year":2023,"lang":"en","type":"article","venue":"New Phytologist","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Youth Innovation Promotion Association of the Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Biology; Locus (genetics); Supergene (geology); Evolutionary biology; Heterostyly; Genetics; Genome; Comparative genomics; Quantitative trait locus; Gene; Genomics; Botany; Pollen; Ecology; Pollination","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001663489,0.0001488646,0.0002169508,0.00003234227,0.0002145152,0.00003291892,0.0004000337,0.0001149282,0.00005648765],"category_scores_gemma":[0.0001275024,0.00005393022,0.0000923394,0.001223068,0.0001646853,0.00007662057,0.0001437477,0.0001147478,0.00007369437],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007892174,"about_ca_system_score_gemma":0.00006781978,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.008664516,"about_ca_topic_score_gemma":0.04084023,"domain_scores_codex":[0.9987528,0.0001010297,0.0003300593,0.0003090263,0.0002227925,0.0002842499],"domain_scores_gemma":[0.9994076,0.0002412703,0.0001102196,0.0001189919,0.00004594746,0.00007590983],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003515637,0.0001126811,0.04375265,0.00001110884,0.00001644558,0.000008448707,0.0008566663,0.0001919518,0.939348,0.00147892,0.0004604972,0.01372745],"study_design_scores_gemma":[0.0003415287,0.0003035012,0.9372222,0.00002369344,0.00001969266,0.000004624188,0.0009259954,0.0002056091,0.0209284,0.01149143,0.02829093,0.0002423788],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940339,0.001459257,0.00001256346,0.003265883,0.0001429045,0.0002787589,0.000017079,0.0000992045,0.0006904852],"genre_scores_gemma":[0.9990583,0.0001893026,0.00005100928,0.0000942853,0.0002120471,0.00003850121,0.00007357336,0.000001751318,0.0002812067],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9184197,"threshold_uncertainty_score":0.9979368,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01648049768719813,"score_gpt":0.2226897086014388,"score_spread":0.2062092109142407,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}