{"id":"W4386819536","doi":"10.1101/2023.09.17.558162","title":"A Parasite Odyssey: An RNA virus concealed in <i>Toxoplasma gondii</i>","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Toxoplasma gondii; Virology; Virus; Microbiome; Genome; Clade; Parasite hosting; In silico; Host (biology); RNA virus; Microbiology; Phylogenetics; Genetics; Gene; Antibody","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003084392,0.0003345119,0.0004404473,0.0004642248,0.0005016123,0.0009000997,0.0002761039,0.0003388,0.00116406],"category_scores_gemma":[0.0009619532,0.0001430861,0.0006510827,0.0005360822,0.0003716784,0.0004089815,0.0004667548,0.0004857078,0.0003431955],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003473751,"about_ca_system_score_gemma":0.0003662062,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003986032,"about_ca_topic_score_gemma":0.005482401,"domain_scores_codex":[0.9997608,0.00003839701,0.00001592267,0.00007840426,0.00007663354,0.00002977185],"domain_scores_gemma":[0.9995468,0.0002029954,0.00009222448,0.0000431728,0.00006210494,0.0000526491],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002087643,0.0002302499,0.184384,0.002342443,0.000795654,0.00260939,0.000399772,0.03258795,0.6894611,0.004139913,0.01681684,0.06414504],"study_design_scores_gemma":[0.0002504914,0.002441654,0.2215931,0.0005725036,0.001120245,0.006641589,0.001823857,0.2615356,0.3883467,0.01088524,0.1045572,0.000231688],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9790494,0.002653297,0.005846541,0.0007654412,0.0001315603,0.00004482944,0.007854735,0.0007935493,0.002860699],"genre_scores_gemma":[0.9632142,0.001307477,0.01353398,0.0006583629,0.00003526818,0.00003161552,0.01996816,0.0001334416,0.001117531],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003986032,"threshold_uncertainty_score":0.00792563,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02815259414700182,"score_gpt":0.2688655335702624,"score_spread":0.2407129394232606,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}