{"id":"W4386864934","doi":"10.1128/spectrum.02755-22","title":"Gut microbiota of an Amazonian fish in a heterogeneous riverscape: integrating genotype, environment, and parasitic infections","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Fonds de recherche du Québec – Nature et technologies; Instituto Chico Mendes de Conservação da Biodiversidade; Fundação de Amparo à Pesquisa do Estado do Amazonas; Instituto Nacional de Ciência e Tecnologia Centro de Estudos das Adaptações da Biota Aquática da Amazônia; Instituto Nacional de Pesquisas da Amazônia; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec; Ministério da Ciência, Tecnologia e Inovação; Mitacs; Government of Canada","keywords":"Biology; Gut flora; Cichlid; Microbiome; Host (biology); Zoology; Amazonian; Operational taxonomic unit; Phylogenetics; Ecology; Amazon rainforest; Fish <Actinopterygii>; Genetics; 16S ribosomal RNA; Immunology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002538926,0.0002219349,0.0003431388,0.0004917854,0.0005662226,0.0003976662,0.0001689616,0.0002194655,0.0005066758],"category_scores_gemma":[0.0003198192,0.0001880883,0.0001984374,0.0004475462,0.0004952186,0.00022889,0.00049597,0.0001637174,0.00005903743],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003192626,"about_ca_system_score_gemma":0.0003746968,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01353371,"about_ca_topic_score_gemma":0.02965517,"domain_scores_codex":[0.9998184,0.00003243712,0.00001383091,0.00007202533,0.00003047418,0.00003287675],"domain_scores_gemma":[0.9997965,0.00002390361,0.00008491086,0.00001537674,0.00004263987,0.00003673425],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001776468,0.00006244746,0.9164864,0.00005337213,0.00007003928,0.0003965359,0.001202744,0.0001488881,0.07839659,0.00003777749,0.00003472633,0.002932773],"study_design_scores_gemma":[0.0000031351,0.0001265139,0.9976103,0.000006233951,0.00002399547,0.00021923,0.0009235867,0.0002301901,0.0007234628,0.00001854435,0.0001106813,0.000003995977],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997467,0.00003565515,0.00008881286,0.000007288785,4.30519e-7,0.000004711696,0.00005057596,6.754406e-7,0.00006495896],"genre_scores_gemma":[0.999572,0.00002401714,0.0002808552,0.00001063003,0.000001083913,0.000006193199,0.00005024284,7.103379e-7,0.00005421264],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01353371,"threshold_uncertainty_score":0.02690989,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006165129996552126,"score_gpt":0.234407200783914,"score_spread":0.2282420707873619,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}