{"id":"W4386864934","doi":"10.1128/spectrum.02755-22","title":"Gut microbiota of an Amazonian fish in a heterogeneous riverscape: integrating genotype, environment, and parasitic infections","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Fonds de recherche du Québec – Nature et technologies; Instituto Chico Mendes de Conservação da Biodiversidade; Fundação de Amparo à Pesquisa do Estado do Amazonas; Instituto Nacional de Ciência e Tecnologia Centro de Estudos das Adaptações da Biota Aquática da Amazônia; Instituto Nacional de Pesquisas da Amazônia; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec; Ministério da Ciência, Tecnologia e Inovação; Mitacs; Government of Canada","keywords":"Biology; Gut flora; Cichlid; Microbiome; Host (biology); Zoology; Amazonian; Operational taxonomic unit; Phylogenetics; Ecology; Amazon rainforest; Fish <Actinopterygii>; Genetics; 16S ribosomal RNA; Immunology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001684748,0.0001980313,0.0002512612,0.0001852138,0.0001026542,0.00001166878,0.0001544994,0.0002641746,0.00006316142],"category_scores_gemma":[0.00001648905,0.0002055225,0.00006319406,0.0001667756,0.0002336406,0.000004922098,0.0001170053,0.0001628731,0.00003725007],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003507398,"about_ca_system_score_gemma":0.00005732491,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001587317,"about_ca_topic_score_gemma":0.002247051,"domain_scores_codex":[0.9986312,0.0001269523,0.0002981058,0.0004800181,0.00001954584,0.0004441377],"domain_scores_gemma":[0.9994874,0.00001646256,0.0001007834,0.0003092036,0.00001206655,0.00007406352],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003045569,0.00009040914,0.01914641,0.00002425973,0.0000334041,0.00001446761,0.0001449574,0.0001039891,0.9798349,0.00002315437,0.0003451208,0.0002084905],"study_design_scores_gemma":[0.002860385,0.002842364,0.2306762,0.00007295975,0.00006857608,0.001688996,0.0004017528,0.000181988,0.7310259,0.0002286349,0.02896781,0.0009844147],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988716,0.0001702853,0.00003828116,0.0002971392,0.0001050495,0.000231256,0.0001808259,0.00002416032,0.0000813886],"genre_scores_gemma":[0.998127,0.0004141036,0.000287359,0.0003028263,0.00005901063,0.00001023665,0.0006106735,0.00002524374,0.0001635381],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.248809,"threshold_uncertainty_score":0.8380966,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006165129996552126,"score_gpt":0.234407200783914,"score_spread":0.2282420707873619,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}