{"id":"W4386896812","doi":"10.1101/2023.09.18.558330","title":"Reticulate evolution and rapid development of reproductive barriers upon secondary contact pose challenges for species delineation in a forest fungus","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Sympatric speciation; Reproductive isolation; Allopatric speciation; Evolutionary biology; Mating; Hybrid; Phylogenetic tree; Population; Asexuality; Sympatry; Mating system; Phylogenetics; Fungus; Genetic algorithm; Ecology; Genetics; Gene; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003611171,0.0001790024,0.0002303185,0.0006792247,0.0004548311,0.000488793,0.0002725724,0.0003322243,0.0008261773],"category_scores_gemma":[0.0005521865,0.000156236,0.0001738263,0.0003406776,0.0003331968,0.0003265018,0.0005275581,0.0003670137,0.0001524745],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000212996,"about_ca_system_score_gemma":0.0001272835,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009138088,"about_ca_topic_score_gemma":0.002429777,"domain_scores_codex":[0.9998332,0.00003674688,0.00001076384,0.00007095038,0.00002055052,0.00002785246],"domain_scores_gemma":[0.9995104,0.0001749247,0.0001478918,0.00006306177,0.00003722022,0.00006653159],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001680333,0.00007818956,0.2493897,0.00009903013,0.00009882155,0.0002959223,0.0009463106,0.0007264021,0.7335822,0.0005384142,0.00004314526,0.01403381],"study_design_scores_gemma":[0.00000519994,0.0000847159,0.9917423,0.000009434851,0.00002095248,0.0003683202,0.0005305831,0.001102055,0.005152198,0.000444172,0.0005304695,0.000009616993],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986807,0.00008729781,0.0009089777,0.000009877737,8.886421e-7,0.00000308876,0.00005125654,0.000007192817,0.0002506964],"genre_scores_gemma":[0.9991233,0.00004113761,0.0006634656,0.000009816413,0.000001571114,0.000004867027,0.00009719871,0.000003420005,0.00005526771],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009138088,"threshold_uncertainty_score":0.002763867,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02624086022677271,"score_gpt":0.2117654755243222,"score_spread":0.1855246152975495,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}