{"id":"W4386979705","doi":"10.1093/jhered/esad052","title":"The reference genome assembly of the bright cobblestone lichen, <i>Acarospora socialis</i>","year":2023,"lang":"en","type":"article","venue":"Journal of Heredity","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Genome Center, University of California, Davis; National Institute of Food and Agriculture; University of California, Riverside; Canadian Institute for Advanced Research; University of California, Davis; University of California, Santa Cruz; U.S. Department of Agriculture; University of California; National Institutes of Health; National Science Foundation","keywords":"Lichen; Herbarium; Biology; Sequence assembly; Genomics; Population; Genome; Population genomics; Evolutionary biology; Ecology; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008687137,0.0009267163,0.0009874236,0.001870377,0.001471077,0.001403416,0.00105258,0.0009205048,0.008214128],"category_scores_gemma":[0.002203603,0.0004740962,0.001086597,0.003723946,0.0002666337,0.0008119998,0.0008476873,0.001505098,0.007197879],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008851713,"about_ca_system_score_gemma":0.002483345,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01370358,"about_ca_topic_score_gemma":0.02650621,"domain_scores_codex":[0.999253,0.00007690027,0.00007886645,0.0002874889,0.0002149893,0.00008873395],"domain_scores_gemma":[0.9990057,0.0001231077,0.0001727057,0.0001526166,0.0004298793,0.0001159152],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001263273,0.0002229203,0.01143916,0.003683327,0.000220859,0.001209132,0.001688974,0.00351736,0.8023034,0.004750818,0.06570061,0.1040002],"study_design_scores_gemma":[0.0001819008,0.0006410467,0.1121402,0.0009757471,0.0005142601,0.001933177,0.0007569997,0.008577719,0.09832471,0.002217834,0.7735263,0.0002102153],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.2144291,0.0044072,0.1018204,0.0007375051,0.0006605784,0.0008277237,0.6412991,0.006110835,0.02970766],"genre_scores_gemma":[0.05521561,0.001290261,0.08672361,0.0001972408,0.00005587913,0.0005290195,0.8471912,0.001115527,0.007681626],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01370358,"threshold_uncertainty_score":0.02747893,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02911209390260797,"score_gpt":0.239594614058744,"score_spread":0.210482520156136,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}