{"id":"W4386986273","doi":"10.1007/s00253-023-12743-6","title":"Genomic and proteomic characterization of vB_SauM-UFV_DC4, a novel Staphylococcus jumbo phage","year":2023,"lang":"en","type":"article","venue":"Applied Microbiology and Biotechnology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Sistema de Laboratórios em Nanotecnologias, Universidade Federal de Viçosa; Norges Miljø- og Biovitenskapelige Universitet; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação de Amparo à Pesquisa do Estado de Minas Gerais; Ministério da Ciência, Tecnologia e Inovação; Financiadora de Estudos e Projetos; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Staphylococcus aureus; Genome; Biology; Lytic cycle; Polymerase; Microbiology; RNA polymerase; RNA; DNA; Computational biology; Virology; Gene; Bacteria; Genetics; Virus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001045757,0.0003676826,0.0002182498,0.0006131072,0.0002405867,0.0003821385,0.000163275,0.0003085818,0.0006646373],"category_scores_gemma":[0.0003843216,0.0001071242,0.0004624929,0.0005043444,0.0001905061,0.0002195027,0.0003182595,0.0003738168,0.0003770237],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001857833,"about_ca_system_score_gemma":0.0002328722,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002120309,"about_ca_topic_score_gemma":0.001137406,"domain_scores_codex":[0.999903,0.00001034393,0.000007521618,0.00002727093,0.00003119105,0.0000206734],"domain_scores_gemma":[0.9997973,0.00004882753,0.00005071772,0.00001737579,0.00004082597,0.0000448809],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001011122,0.00002460459,0.004408928,0.00006280805,0.00001098901,0.0002195834,0.00008552001,0.00006135281,0.9928646,0.00003306805,0.00005940516,0.002068033],"study_design_scores_gemma":[0.00003429816,0.0006992796,0.4206046,0.00006975338,0.0002021997,0.004429239,0.001230327,0.003572889,0.5496142,0.0002484226,0.01922966,0.00006518916],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955556,0.0005022677,0.001319281,0.00006570725,0.00001851259,0.00002690527,0.001937598,0.00002602563,0.0005480355],"genre_scores_gemma":[0.9739583,0.0006407541,0.007783648,0.0001169377,0.00003318919,0.00005789174,0.01431301,0.00005025828,0.003046169],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002120309,"threshold_uncertainty_score":0.004215956,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006405804503408723,"score_gpt":0.1973047709181701,"score_spread":0.1908989664147614,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}