{"id":"W4386986273","doi":"10.1007/s00253-023-12743-6","title":"Genomic and proteomic characterization of vB_SauM-UFV_DC4, a novel Staphylococcus jumbo phage","year":2023,"lang":"en","type":"article","venue":"Applied Microbiology and Biotechnology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Sistema de Laboratórios em Nanotecnologias, Universidade Federal de Viçosa; Norges Miljø- og Biovitenskapelige Universitet; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação de Amparo à Pesquisa do Estado de Minas Gerais; Ministério da Ciência, Tecnologia e Inovação; Financiadora de Estudos e Projetos; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Staphylococcus aureus; Genome; Biology; Lytic cycle; Polymerase; Microbiology; RNA polymerase; RNA; DNA; Computational biology; Virology; Gene; Bacteria; Genetics; Virus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001012339,0.0001491756,0.0002231055,0.0001198783,0.0001145614,0.000008248527,0.0001320387,0.0003817397,0.0001391606],"category_scores_gemma":[0.000005107151,0.0001372193,0.00002537796,0.0002334956,0.0006903888,0.00004476551,0.0003709621,0.0001914725,0.0001593089],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002494107,"about_ca_system_score_gemma":0.000006617795,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004605085,"about_ca_topic_score_gemma":0.00002075646,"domain_scores_codex":[0.99911,0.00001283684,0.0002198421,0.0003758007,0.00001449385,0.0002669787],"domain_scores_gemma":[0.9996503,0.00001603988,0.0001260792,0.0001727172,0.000004432514,0.00003042974],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003579909,0.00003605173,0.0004209809,0.00001351917,0.00001948127,0.000001229007,0.00008074569,7.687021e-7,0.9943014,0.0004125132,0.0001136048,0.004563864],"study_design_scores_gemma":[0.0005094147,0.00008283804,0.09484058,0.000008052447,0.00001570962,0.00007348844,0.00004033911,0.00002084221,0.8924438,0.00007501432,0.01173062,0.0001592729],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980676,0.00001347913,0.0003382055,0.0006797664,0.0000712853,0.0004189826,0.0001297306,0.0001472768,0.0001336571],"genre_scores_gemma":[0.9987166,0.0002030182,0.0005615991,0.0001712695,0.00001541407,0.00003923233,0.0001189909,0.00001318175,0.0001606762],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1018576,"threshold_uncertainty_score":0.5595641,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006405804503408723,"score_gpt":0.1973047709181701,"score_spread":0.1908989664147614,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}