{"id":"W4386998232","doi":"10.1007/s00203-023-03671-0","title":"Characterization and description of Gabonibacter chumensis sp. nov., isolated from feces of a patient with non-small cell lung cancer treated with immunotherapy","year":2023,"lang":"en","type":"article","venue":"Archives of Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de la Recherche Scientifique; McGill University; McGill University Health Centre; Université de Montréal","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Institut Du Cancer de Montréal; Directorate for Biological Sciences; Terry Fox Research Institute","keywords":"Biology; 16S ribosomal RNA; Phylogenetic tree; Microbiology; Strain (injury); Ribosomal RNA; genomic DNA; Gene; Phylogenetics; Bacteria; Sequence analysis; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00001924188,0.0001184225,0.0002231924,0.00005823053,0.00002283765,0.000002203889,0.00006070684,0.00005447293,0.000003960557],"category_scores_gemma":[0.000001307372,0.00008770826,0.00003106301,0.00006317673,0.0001697957,8.852247e-7,0.00004871613,0.00002733179,1.291469e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002052795,"about_ca_system_score_gemma":0.00002717245,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003325722,"about_ca_topic_score_gemma":0.0001522903,"domain_scores_codex":[0.9994407,0.00003669124,0.000187376,0.0002001249,0.00001563319,0.000119495],"domain_scores_gemma":[0.9995743,0.00001826018,0.0002105846,0.0001340074,0.00004783104,0.00001502086],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005927188,0.0000405811,0.1781729,0.00003541854,0.0002329782,4.34302e-7,0.000877474,0.00002980048,0.8191363,4.75952e-7,0.000005092489,0.0008758709],"study_design_scores_gemma":[0.0007256654,0.0007228176,0.2438592,0.0000440455,0.00003874341,0.000002443507,0.00008553491,0.00005240282,0.7542533,0.000002630784,0.000129777,0.00008336956],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998378,0.000746919,0.0002755928,0.000018106,0.00002111794,0.0002005045,0.0003313845,0.000002064226,0.00002635422],"genre_scores_gemma":[0.9963253,0.002522029,0.0005669172,0.00002093579,0.00001058283,0.00001454135,0.0004802414,0.00001425615,0.00004517931],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0656864,"threshold_uncertainty_score":0.3576639,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004491040939744848,"score_gpt":0.1819103353838139,"score_spread":0.177419294444069,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}