{"id":"W4387002479","doi":"10.1128/mra.00337-23","title":"Genome sequencing of 15 acid-tolerant yeasts","year":2023,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Concordia University","funders":"Concordia University; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Genome; Comparative genomics; Genetics; Whole genome sequencing; Strain (injury); Genomics; Yeast; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000216164,0.0001133255,0.000203141,0.0000397537,0.0001402938,0.00001226866,0.0002106312,0.00008322486,0.0006960477],"category_scores_gemma":[0.00001375491,0.00004986014,0.0001016554,0.0005818679,0.000108052,0.00003572945,0.00005851357,0.0000686308,0.0003965808],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004227074,"about_ca_system_score_gemma":0.000008065925,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002618786,"about_ca_topic_score_gemma":0.00003894702,"domain_scores_codex":[0.9990124,0.0001100031,0.0002680227,0.0002532963,0.00007614055,0.000280195],"domain_scores_gemma":[0.9996848,0.00003724703,0.0001123393,0.00006612911,0.00005267599,0.0000467869],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002133134,0.00002936157,0.002973756,0.000003441816,0.00004379306,0.000006101825,0.0003138203,0.00006270383,0.994146,0.000009622244,0.0008031939,0.001586806],"study_design_scores_gemma":[0.00117734,0.000830486,0.06045955,0.0001039998,0.0001353741,0.00006143699,0.01224922,0.0003637098,0.1025872,0.0002219661,0.8209307,0.0008790144],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975877,0.00006952965,0.000002606358,0.0004437522,0.00003903204,0.0001013431,0.0005237748,0.00006318001,0.001169066],"genre_scores_gemma":[0.9929961,0.00002064174,0.00002016857,0.0004458191,0.00005808239,0.000006900318,0.004127188,0.000001021975,0.002324057],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8915589,"threshold_uncertainty_score":0.7621234,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03242535242230821,"score_gpt":0.2323251171122835,"score_spread":0.1998997646899753,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}