{"id":"W4387004990","doi":"10.1016/j.vaccine.2023.09.042","title":"Clonal diversity of Streptococcus pneumoniae serotype 19A collected from children < 5 years old in Québec, Canada, 2016–2021","year":2023,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Centre hospitalier universitaire de Québec; Université Laval; Institut National de Santé Publique du Québec; Public Health Agency of Canada","funders":"Public Health Agency of Canada","keywords":"Serotype; Streptococcus pneumoniae; Biology; Clade; Phylogenetic tree; Genotype; Phylogenetic diversity; Microbiology; Antibiotics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005711613,0.0004396924,0.0004273755,0.001659552,0.001974484,0.001118592,0.000702563,0.0003877952,0.002251578],"category_scores_gemma":[0.001610178,0.0002281009,0.0004043452,0.002772873,0.0005758684,0.0003067717,0.0005089752,0.0004935081,0.0002973287],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01617065,"about_ca_system_score_gemma":0.0139417,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9856505,"about_ca_topic_score_gemma":0.9910122,"domain_scores_codex":[0.999289,0.00003962467,0.0000436368,0.0001684182,0.0002301096,0.0002292018],"domain_scores_gemma":[0.9980642,0.0000911586,0.0002642719,0.0000386123,0.001192107,0.0003495539],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000110641,0.00001536237,0.986747,0.00006770452,0.0000461133,0.0002312243,0.0007731103,0.0001323901,0.001560114,0.00005810868,0.002808361,0.007449759],"study_design_scores_gemma":[0.000004898482,0.00002849209,0.9959079,0.00005372745,0.00002173449,0.0001656815,0.0009083751,0.000228803,0.0002366101,0.000008139621,0.002425867,0.000009894527],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9716443,0.001946727,0.0003810022,0.0003611683,0.00003224005,0.00009292348,0.02322332,0.00003869765,0.002279599],"genre_scores_gemma":[0.9880819,0.0009377184,0.0005541532,0.0003942366,0.00001960497,0.00005080847,0.008344907,0.00001629141,0.00160036],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01617065,"threshold_uncertainty_score":0.1173269,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008330492777208503,"score_gpt":0.2185776880191552,"score_spread":0.2102471952419467,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}