{"id":"W4387078514","doi":"10.1093/genetics/iyad143","title":"Revised fission yeast gene and allele nomenclature guidelines for machine readability","year":2023,"lang":"en","type":"article","venue":"Genetics","topic":"Viral Infectious Diseases and Gene Expression in Insects","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Toronto Metropolitan University","funders":"National Institute of General Medical Sciences; Wellcome Trust","keywords":"Biology; Genetics; Nomenclature; Allele; Gene nomenclature; Readability; Gene; Computational biology; Programming language; Computer science; Zoology; Taxonomy (biology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001657091,0.000147751,0.0001267729,0.00003356012,0.0001428285,0.00002622955,0.0001082343,0.0001475501,0.00001844061],"category_scores_gemma":[0.000233417,0.0001262789,0.00008595172,0.00009658521,0.00004290552,0.000001921842,0.0001619269,0.00004721238,0.00000753042],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006027327,"about_ca_system_score_gemma":0.00003732596,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005288949,"about_ca_topic_score_gemma":0.00001277441,"domain_scores_codex":[0.9990637,0.00003058884,0.0002173758,0.0003705009,0.00009767713,0.0002201961],"domain_scores_gemma":[0.9992563,0.00001038814,0.00006020231,0.0003504439,0.0001993581,0.0001233747],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008644858,0.00003115097,0.003109807,0.00006888251,0.00002915848,0.000001188667,0.00001992888,0.0002911447,0.7525016,0.00001175212,0.2355834,0.008265531],"study_design_scores_gemma":[0.000902747,0.0006227464,0.008844746,0.00002972846,0.00004741356,0.00001502202,0.00003865582,0.003069981,0.3166593,0.001458956,0.6678745,0.0004362693],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908834,0.004646018,0.002364898,0.0009126053,0.0002433764,0.0004417731,0.0002998259,0.00005458291,0.0001534978],"genre_scores_gemma":[0.9754539,0.004913676,0.01233952,0.00135026,0.001118501,0.0001313337,0.001510078,0.00006118603,0.0031216],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4358423,"threshold_uncertainty_score":0.5149506,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04272565405383314,"score_gpt":0.3445012624934008,"score_spread":0.3017756084395676,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}