{"id":"W4387104465","doi":"10.1101/2023.09.22.559041","title":"Genome Report: Chromosome-scale Genome Assembly of the West Indian fruit fly <i>Anastrepha obliqua</i> (Diptera: Tephritidae)","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Insect behavior and control techniques","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Agricultural Research Service; Universidad del Valle; U.S. Department of Agriculture","keywords":"Biology; Synteny; Genome; Tephritidae; Contig; Anastrepha; Context (archaeology); Sequence assembly; Comparative genomics; Genetics; Genomics; PEST analysis; Gene; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009630399,0.0007319101,0.0009182394,0.000103303,0.0004148201,0.0003407212,0.001800505,0.0008812558,0.0001645792],"category_scores_gemma":[0.0001204733,0.0003581739,0.0005913597,0.001092089,0.0002433085,0.0002151012,0.001165334,0.00108999,0.00006882825],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000225631,"about_ca_system_score_gemma":0.0002413848,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001034989,"about_ca_topic_score_gemma":0.0003462928,"domain_scores_codex":[0.995665,0.0002463945,0.001136612,0.001314681,0.0007754947,0.0008617751],"domain_scores_gemma":[0.9970052,0.0001052356,0.001035439,0.001010148,0.0005550361,0.0002889472],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001388204,0.0001451248,0.01808304,0.00008898638,0.00006398217,0.0002114527,0.0000185199,0.000002616415,0.9812632,0.00004015386,0.00005400637,0.00001502388],"study_design_scores_gemma":[0.0001393431,0.0001041088,0.8282085,0.0002060238,0.00009866613,3.398613e-7,0.00001032019,0.000003593358,0.1673821,0.000004750776,0.003217509,0.0006248046],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949834,0.00041141,0.00000927262,0.0006626889,0.0008311768,0.001294676,0.0009879486,0.0007876448,0.00003177812],"genre_scores_gemma":[0.9979619,0.0002088275,0.0002371761,0.0002311666,0.0008637309,0.0004204355,0.000007570246,0.00002935562,0.00003982054],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8138812,"threshold_uncertainty_score":0.999887,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01610839160290389,"score_gpt":0.2103463335117286,"score_spread":0.1942379419088247,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}