{"id":"W4387104465","doi":"10.1101/2023.09.22.559041","title":"Genome Report: Chromosome-scale Genome Assembly of the West Indian fruit fly <i>Anastrepha obliqua</i> (Diptera: Tephritidae)","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Insect behavior and control techniques","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Agricultural Research Service; Universidad del Valle; U.S. Department of Agriculture","keywords":"Biology; Synteny; Genome; Tephritidae; Contig; Anastrepha; Context (archaeology); Sequence assembly; Comparative genomics; Genetics; Genomics; PEST analysis; Gene; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002716452,0.0005584134,0.0004071306,0.0009199953,0.0005832951,0.000820449,0.0004715743,0.0003993952,0.003953315],"category_scores_gemma":[0.0007055468,0.0003163519,0.0007590805,0.001224407,0.0001406849,0.0003426111,0.0003769443,0.0008169895,0.002918833],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004454173,"about_ca_system_score_gemma":0.0008811778,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01370563,"about_ca_topic_score_gemma":0.01308955,"domain_scores_codex":[0.9998581,0.0000115855,0.00001101065,0.0000592906,0.00004303433,0.00001700646],"domain_scores_gemma":[0.9997199,0.00006672538,0.00004815623,0.00003431706,0.00008489367,0.0000460109],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001226384,0.0001876221,0.009848909,0.001220972,0.0001829995,0.001103998,0.0006808536,0.003432212,0.9135056,0.001290826,0.020567,0.04675257],"study_design_scores_gemma":[0.0003573103,0.0005487388,0.3106853,0.0002829321,0.0005953822,0.002972276,0.0009232072,0.02055804,0.3962602,0.001917061,0.2646891,0.0002104898],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5026218,0.002402217,0.09353164,0.0008894751,0.0004209946,0.000547096,0.3796701,0.008300927,0.01161573],"genre_scores_gemma":[0.1664428,0.001085708,0.1247636,0.0001078662,0.00006518183,0.0001890166,0.6997842,0.00154753,0.006014137],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01370563,"threshold_uncertainty_score":0.02725172,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01610839160290389,"score_gpt":0.2103463335117286,"score_spread":0.1942379419088247,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}