{"id":"W4387122813","doi":"10.1101/2023.09.26.559573","title":"TEM Experiment and Complete Genome Sequencing with Comparative Genomic Analysis to Uncover Potential Probiotic Features of Isolated <i>Lactobacillus delbrueckii</i> subsp. <i>indicus</i> TY-11","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; National Health and Medical Research Council","keywords":"Biology; Probiotic; Genome; Microbiology; Gut flora; Gene; Genomic island; Genetics; Metagenomics; Lactobacillus; Comparative genomics; Bacteria; Genomics; Biochemistry","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000286205,0.0008583046,0.0007078808,0.001078267,0.0006258138,0.0004916996,0.0003183542,0.0004450341,0.002592909],"category_scores_gemma":[0.0005135721,0.0003052861,0.001070428,0.002348343,0.000251684,0.0003747065,0.0004107086,0.0007347024,0.0009348356],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003115726,"about_ca_system_score_gemma":0.0004302853,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003449525,"about_ca_topic_score_gemma":0.003393637,"domain_scores_codex":[0.9996355,0.0000372535,0.00004217986,0.0001419324,0.000070206,0.00007294535],"domain_scores_gemma":[0.9997242,0.00005618993,0.00006764199,0.00003334815,0.00008015492,0.00003830885],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003557014,0.0001055246,0.005867823,0.0004599566,0.00004789414,0.0004693694,0.0002991769,0.0003461326,0.9838186,0.0001692296,0.0005353437,0.007525342],"study_design_scores_gemma":[0.00007983432,0.001185887,0.3480871,0.0002429552,0.000710052,0.002781258,0.002335761,0.006554317,0.5956715,0.0005017764,0.04169499,0.0001546103],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.935459,0.00150439,0.01653317,0.000393176,0.0001360306,0.0002775643,0.0400839,0.0004544977,0.005158242],"genre_scores_gemma":[0.8498127,0.002065973,0.06053436,0.0003609627,0.00004358665,0.0006420312,0.08114673,0.0003991526,0.004994521],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003449525,"threshold_uncertainty_score":0.008674204,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02514341617236238,"score_gpt":0.212008317988487,"score_spread":0.1868649018161246,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}