{"id":"W4387166623","doi":"10.1016/j.molp.2023.09.020","title":"Plant and animal positive-sense single-stranded RNA viruses encode small proteins important for viral infection in their negative-sense strand","year":2023,"lang":"en","type":"article","venue":"Molecular Plant","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":41,"is_retracted":false,"has_abstract":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Key Research and Development Program of China; Zhejiang University; Agriculture and Agri-Food Canada; Fujian Medical University; Institute of Microbiology, Chinese Academy of Sciences; University of Hong Kong; Natural Science Foundation of Fujian Province; Chinese Academy of Sciences; China Agricultural University; Beijing Academy of Agricultural and Forestry Sciences; Chinese Academy of Agricultural Sciences; National Natural Science Foundation of China; Shandong University","keywords":"Biology; Sense (electronics); RNA; ENCODE; Virology; Plant virus; RNA virus; Genetics; Virus; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003776869,0.0002422688,0.0002952692,0.00006430871,0.0002192544,0.00009245465,0.00007505593,0.0001084529,0.000006701898],"category_scores_gemma":[0.0001732829,0.0001067514,0.00008918219,0.000285259,0.0001000801,0.00008336797,0.00008312846,0.0001728802,0.000004782007],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003616306,"about_ca_system_score_gemma":0.00001567838,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001257028,"about_ca_topic_score_gemma":0.01016375,"domain_scores_codex":[0.9984063,0.000140835,0.0002907569,0.0004196468,0.0002124152,0.0005300428],"domain_scores_gemma":[0.9992881,0.0004195134,0.000085466,0.00005074385,0.00004209597,0.0001141059],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007994032,0.00009635503,0.001423033,0.00002441209,0.0000484091,0.0006294094,0.0002236133,0.000009477188,0.9954275,0.00009987834,0.00008234022,0.001136182],"study_design_scores_gemma":[0.001006548,0.001582226,0.1218051,0.0001327326,0.00002012691,0.0001183269,0.0002093731,0.001294894,0.8715063,0.0008689948,0.001040984,0.0004143698],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992587,0.000110328,0.00002028063,0.000332838,0.00003598817,0.001029396,0.005699211,0.00009787493,0.00008709686],"genre_scores_gemma":[0.9988397,0.0003300651,0.00007152488,0.0001075247,0.00005872653,0.0001031926,0.0004681915,0.000003414199,0.00001759771],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1239212,"threshold_uncertainty_score":0.5671614,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05188932150218864,"score_gpt":0.2544207065451477,"score_spread":0.2025313850429591,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}