{"id":"W4387298459","doi":"10.1093/ofid/ofad496","title":"Genomic Analysis of Group B <i>Streptococcus</i> Carriage Isolates From Botswana Reveals Distinct Local Epidemiology and Identifies Novel Strains","year":2023,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Center for AIDS Research, University of Washington; York University; University of Pennsylvania; National Institutes of Health; NYU Grossman School of Medicine; Children's Hospital of Philadelphia; Pediatric Infectious Diseases Society","keywords":"Carriage; Group B; Streptococcus; Streptococcus agalactiae; Epidemiology; Medicine; Molecular epidemiology; Erythromycin; Microbiology; Group A; Sequence (biology); Biology; Genetics; Genotype; Antibiotics; Gene; Bacteria; Internal medicine; Pathology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001473309,0.0002884738,0.0001466638,0.001015976,0.0004608672,0.0005248444,0.0001432918,0.0002243011,0.001609065],"category_scores_gemma":[0.0006167869,0.0001580713,0.000259337,0.001063109,0.0003261051,0.00009189824,0.0003753665,0.0002667715,0.0002408116],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004165213,"about_ca_system_score_gemma":0.0005074191,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03011786,"about_ca_topic_score_gemma":0.04690323,"domain_scores_codex":[0.9998401,0.00002727304,0.00001601107,0.00004400473,0.00002206783,0.00005059371],"domain_scores_gemma":[0.9997836,0.00004310262,0.00007456165,0.00001994478,0.00003953475,0.00003921254],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003325469,0.00004884271,0.8153805,0.0001503852,0.00005354657,0.001673262,0.00235581,0.0001492995,0.1650317,0.0001155394,0.0002574089,0.01445122],"study_design_scores_gemma":[0.000007119049,0.0001321757,0.9904483,0.00004743981,0.00003344607,0.002059697,0.001722655,0.0001334066,0.004387461,0.00003723302,0.0009849515,0.000006109552],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998413,0.00009257757,0.0001730926,0.00004939703,0.000003712845,0.00001641466,0.0006291259,0.000005293372,0.0006174817],"genre_scores_gemma":[0.9983667,0.000115188,0.0005111378,0.00005671165,0.000002769252,0.0000119673,0.0006074857,0.00000501257,0.0003231513],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03011786,"threshold_uncertainty_score":0.05988514,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0264770103901233,"score_gpt":0.3155128274570397,"score_spread":0.2890358170669164,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}