{"id":"W4387326464","doi":"10.1002/ajb2.16249","title":"Comprehensive phylogenomic time tree of bryophytes reveals deep relationships and uncovers gene incongruences in the last 500 million years of diversification","year":2023,"lang":"en","type":"article","venue":"American Journal of Botany","topic":"Bryophyte Studies and Records","field":"Agricultural and Biological Sciences","cited_by":100,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; University of British Columbia","funders":"National Science Foundation","keywords":"Biology; Phylogenetic tree; Phylogenetics; Evolutionary biology; Phylogenomics; Diversification (marketing strategy); Macroevolution; Coalescent theory; Molecular clock; Biome; Ecology; Gene; Clade; Genetics; Ecosystem","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006833874,0.0002809397,0.0003752287,0.001377128,0.0007498994,0.0006611852,0.0002528218,0.0003535611,0.001090497],"category_scores_gemma":[0.001161308,0.0002094812,0.0005719081,0.001907637,0.0003837691,0.0005051346,0.0006066727,0.000614677,0.0003875099],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003586482,"about_ca_system_score_gemma":0.0002923788,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001251757,"about_ca_topic_score_gemma":0.003021409,"domain_scores_codex":[0.9997401,0.00004992941,0.00001788712,0.0001022297,0.00004424379,0.00004570338],"domain_scores_gemma":[0.9990575,0.0002454342,0.0003292963,0.00009257939,0.0001078418,0.0001673811],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007424699,0.00006870808,0.5140706,0.0005228112,0.0007574687,0.0009212953,0.002405369,0.008072454,0.4291615,0.002402979,0.001678028,0.03919632],"study_design_scores_gemma":[0.00001055373,0.000099064,0.967777,0.0000660867,0.0002491533,0.001035744,0.000704122,0.01497562,0.006528066,0.001588958,0.006928811,0.00003683893],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921414,0.0008535912,0.0041758,0.00009581285,0.000006086214,0.00000347527,0.002141908,0.00009108072,0.0004907719],"genre_scores_gemma":[0.9921995,0.0003251813,0.00287023,0.00005227017,0.00001099732,0.000008883983,0.004290487,0.00005035304,0.0001920754],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001377128,"threshold_uncertainty_score":0.003648102,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01778826537458338,"score_gpt":0.213820431845578,"score_spread":0.1960321664709946,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}