{"id":"W4387365784","doi":"10.1128/spectrum.05356-22","title":"Design of a novel affinity probe using the cell wall-binding domain of a <i>Listeria monocytogenes</i> autolysin for pathogen detection","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Listeria monocytogenes; Autolysin; Listeria; Microbiology; Fluorescence microscope; Biology; Chemistry; Immunogold labelling; Biochemistry; Molecular biology; Bacteria; Mutant; Fluorescence; Genetics; Antibody; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007519853,0.0002514397,0.0003566883,0.0001051865,0.0001619157,0.00001125822,0.0004251916,0.0003212944,0.000005137706],"category_scores_gemma":[0.00003774638,0.0002102821,0.0001980701,0.0002924679,0.0002378537,0.00000527439,0.0003490121,0.00008200746,0.000002619383],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005047757,"about_ca_system_score_gemma":0.0001355421,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002774908,"about_ca_topic_score_gemma":0.00004202889,"domain_scores_codex":[0.9983197,0.0001978512,0.000517695,0.000479061,0.00004950777,0.0004361615],"domain_scores_gemma":[0.9988436,0.00006752147,0.0004142602,0.0005661976,0.00007318768,0.00003522931],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006133753,0.00008072592,0.0001762747,0.00007666128,0.0001004546,0.000001043977,0.0001535775,0.001347192,0.9972996,0.00002092506,0.00004949676,0.00008074225],"study_design_scores_gemma":[0.001147228,0.0005473276,0.00007013937,0.00001491017,0.00006721741,0.00007113228,0.0001169686,0.0006875772,0.9948655,0.0001178799,0.002077096,0.0002169662],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8327653,0.0001533613,0.1654318,0.0000849175,0.0003249037,0.0008515102,0.0003461415,0.00002481816,0.00001722811],"genre_scores_gemma":[0.9819661,0.0000348052,0.01732274,0.00007878964,0.0001176176,0.00007756905,0.0002655458,0.00005182888,0.00008497096],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1492008,"threshold_uncertainty_score":0.8575055,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08684737789201116,"score_gpt":0.3041123670490529,"score_spread":0.2172649891570418,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}