{"id":"W4387392387","doi":"10.1126/science.adj0070","title":"Mapping SARS-CoV-2 antigenic relationships and serological responses","year":2023,"lang":"en","type":"article","venue":"Science","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":135,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control","funders":"Division of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases; National Institute of Allergy and Infectious Diseases; Seqirus; National Institutes of Health; Shionogi; Deutsches Zentrum für Infektionsforschung; Gates Cambridge Trust; Daiichi Sankyo Europe; University of British Columbia; Cambridge Trust; Bundesministerium für Gesundheit; FUJIFILM Toyama Chemical; Bundesministerium für Bildung und Forschung; Pfizer; Icahn School of Medicine at Mount Sinai; Biomedical Advanced Research and Development Authority; Centers for Disease Control and Prevention; British Columbia Centre for Disease Control; Otsuka Pharmaceutical; Japan Agency for Medical Research and Development; National Center for Immunization and Respiratory Diseases; Provincial Health Services Authority; Moderna","keywords":"Serology; Virology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Antigen; 2019-20 coronavirus outbreak; Biology; Immunology; Antibody; Medicine; Infectious disease (medical specialty); Disease; Outbreak","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002286642,0.00007495382,0.0001206535,0.0004541003,0.000431781,0.00006550858,0.000195104,0.00005920049,0.000003363229],"category_scores_gemma":[0.002483561,0.00005836433,0.00002948433,0.002367983,0.0008104508,0.0001629457,0.0001823682,0.0002581645,0.0004859283],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004368888,"about_ca_system_score_gemma":0.0003574508,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001526403,"about_ca_topic_score_gemma":0.000008932624,"domain_scores_codex":[0.9984955,0.00007502246,0.0001355477,0.0003749451,0.0005202173,0.0003987497],"domain_scores_gemma":[0.9992645,0.0003148211,0.000023608,0.000265248,0.00009414025,0.00003766486],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005579016,0.00001138128,0.2484383,0.00001337897,0.000002568107,0.00006469148,0.0003691562,8.711802e-8,0.7491786,0.0002075345,0.000176859,0.001481617],"study_design_scores_gemma":[0.0003211852,0.0001191266,0.8026153,0.00003488837,0.000003831445,0.000076534,0.0003702082,0.001345292,0.1644635,0.001216053,0.02934757,0.00008649598],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954842,0.0001474169,0.00006729158,0.001754838,0.00007869025,0.0001682327,0.000001064856,0.0001491259,0.00214917],"genre_scores_gemma":[0.9911531,0.00001049,0.0002760779,0.008367204,0.00004337979,0.00001022565,3.84461e-7,0.000005590495,0.0001335194],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5847151,"threshold_uncertainty_score":0.6245788,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2068628836259143,"score_gpt":0.4151955874701452,"score_spread":0.2083327038442309,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}