{"id":"W4387395109","doi":"10.4171/owr/2023/8","title":"Design and Analysis of Infectious Disease Studies","year":2023,"lang":"en","type":"article","venue":"Oberwolfach Reports","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Outbreak; Context (archaeology); Infectious disease (medical specialty); Pandemic; Coronavirus disease 2019 (COVID-19); Transmission (telecommunications); Data science; Genome; Disease transmission; Computer science; Biology; Computational biology; Disease; Virology; Medicine; Genetics; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002613307,0.00007785941,0.000152061,0.0001228476,0.00004304206,0.000005615379,0.00002635986,0.00004213043,0.000005141062],"category_scores_gemma":[0.000186773,0.00007229175,0.00007566339,0.0003939359,0.00007467378,0.000001278506,0.00007682002,0.00002225102,0.000001333288],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005557073,"about_ca_system_score_gemma":0.00003491942,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006263645,"about_ca_topic_score_gemma":0.00001647977,"domain_scores_codex":[0.9993157,0.00003932873,0.000208597,0.000232011,0.000094219,0.0001100848],"domain_scores_gemma":[0.9994581,0.00001434022,0.0001051332,0.0002672032,0.00008496398,0.00007031132],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006229884,0.0001056336,0.8068216,0.00009560889,0.003785082,0.0002244278,0.0002880877,0.101993,0.07615746,0.0001380477,0.006602015,0.003726752],"study_design_scores_gemma":[0.0003004653,0.0002064102,0.9566866,0.00001408822,0.001566413,0.00004987356,0.0001650916,0.02873884,0.004827595,0.001273274,0.005805285,0.0003660505],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904047,0.001476825,0.007644329,0.00004930911,0.00008462176,0.0001009123,0.000005763188,0.00002329001,0.0002102278],"genre_scores_gemma":[0.9970988,0.0009345182,0.0003612456,0.00003913877,0.00001663909,0.00001404121,0.000125963,0.000007758789,0.00140189],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1498651,"threshold_uncertainty_score":0.2947972,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01972842513821559,"score_gpt":0.2924389521543436,"score_spread":0.272710527016128,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}